findChromPeaks methods perform the chromatographic
peak detection on LC/GC-MS data and are part of the modernized
xcms user interface.
The implemented peak detection methods in chromatographic space are:
chromatographic peak detection using the centWave
centWave for more details.
peak detection using a two-step
centWave-based approach considering also feature isotopes. See
centWaveWithPredIsoROIs for more details.
peak detection in chromatographic space. See
matchedFilter for more details.
peak detection using the Kalman filter-based
massifquant for more details.
single-spectrum non-chromatography MS data peak detection.
MSW for more details.
findPeaks for the old peak detection
plotChromPeaks to plot identified chromatographic peaks
for one file.
highlightChromPeaks to highlight identified chromatographic
peaks in an extracted ion chromatogram plot.
refineChromPeaks for methods to refine or clean identified
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