Description Usage Arguments Details Value Author(s) See Also
View source: R/do_findChromPeaks-functions.R
This function performs peak detection in mass spectrometry direct injection spectrum using a wavelet based algorithm.
1 | do_findPeaks_MSW(mz, int, snthresh = 3, verboseColumns = FALSE, ...)
|
mz |
Numeric vector with the individual m/z values from all scans/ spectra of one file/sample. |
int |
Numeric vector with the individual intensity values from all scans/spectra of one file/sample. |
snthresh |
|
verboseColumns |
|
... |
Additional parameters to be passed to the
|
This is a wrapper around the peak picker in Bioconductor's
MassSpecWavelet
package calling
peakDetectionCWT
and
tuneInPeakInfo
functions. See the
xcmsDirect vignette for more information.
A matrix, each row representing an identified peak, with columns:
m/z value of the peak at the centroid position.
Minimum m/z of the peak.
Maximum m/z of the peak.
Always -1
.
Always -1
.
Always -1
.
Integrated (original) intensity of the peak.
Maximum intensity of the peak.
Always NA
.
Maximum MSW-filter response of the peak.
Signal to noise ratio.
Joachim Kutzera, Steffen Neumann, Johannes Rainer
MSW
for the standard user interface
method. peakDetectionCWT
from the
MassSpecWavelet
package.
Other core peak detection functions:
do_findChromPeaks_centWaveWithPredIsoROIs()
,
do_findChromPeaks_centWave()
,
do_findChromPeaks_massifquant()
,
do_findChromPeaks_matchedFilter()
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.