TreeSet-class: Class TreeSet

In xps: Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Description

This is the virtual base class for all other classes providing the link to a ROOT file and the ROOT trees contained therein.

Objects from the Class

A virtual Class: No objects may be created from it.

Slots

setname:

Object of class "character" representing the name to the ROOT file subdirectory where the ROOT trees are stored, usually one of ‘DataTreeSet’, ‘PreprocesSet’, ‘CallTreeSet’.

settype:

Object of class "character" describing the type of treeset stored in setname, usually one of ‘scheme’, ‘rawdata’, ‘preprocess’.

rootfile:

Object of class "character" representing the name of the ROOT file, including full path.

filedir:

Object of class "character" describing the full path to the system directory where rootfile is stored.

numtrees:

Object of class "numeric" representing the number of ROOT trees stored in subdirectoy setname.

treenames:

Object of class "list" representing the names of the ROOT trees stored in subdirectoy setname.

Methods

export

signature(object = "TreeSet"): exports ROOT trees as text file, see export-methods.

fileDir

signature(object = "TreeSet"): extracts slot filedir.

fileDir<-

signature(object = "TreeSet", value = "character"): replaces slot filedir.

root.browser

signature(object = "TreeSet"): opens the ROOT file browser.

rootFile

signature(object = "TreeSet"): extracts slot rootfile.

rootFile<-

signature(object = "TreeSet", value = "character"): replaces slot rootfile.

setName

signature(object = "TreeSet"): extracts slot setname.

setName<-

signature(object = "TreeSet", value = "character"): replaces slot setname.

setType

signature(object = "TreeSet"): extracts slot settype.

setType<-

signature(object = "TreeSet", value = "character"): replaces slot settype.

treeInfo

signature(object = "TreeSet"): extracts UserInfo from ROOT trees.

treeNames

signature(object = "TreeSet"): extracts slot treenames.

Author(s)

Christian Stratowa

See Also

derived classes SchemeTreeSet, DataTreeSet, ExprTreeSet, CallTreeSet.

Examples

showClass("TreeSet")

xps documentation built on Nov. 8, 2020, 6 p.m.