API for yaqcaffy
Affymetrix expression data quality control and reproducibility analysis
| Global functions | |
|---|---|
| .bcalls | Source code |
| .checkNumberOfProbes | Source code |
| .isHgu133plus2 | Source code |
| .mergeAffyBatchObjects | Source code |
| .plotAvbg | Source code |
| .plotAvns | Source code |
| .plotBioQC | Source code |
| .plotPp | Source code |
| .plotQCRatios | Source code |
| .plotSfs | Source code |
| .plotSpikesQC | Source code |
| .plotdata | Source code |
| .plotdiag | Source code |
| .plotrectangle | Source code |
| .removeOK | Source code |
| YAQCStats-class | Man page |
| YaqcBioProbes-class | Man page |
| YaqcControlProbes-class | Man page |
| YaqcDegProbes-class | Man page |
| YaqcSpkProbes-class | Man page |
| arrays | Man page |
| arrays,YAQCStats-method | Man page |
| avbg,YAQCStats-method | Man page |
| avns | Man page |
| avns,YAQCStats-method | Man page |
| bio | Man page |
| bio,YaqcBioProbes-method | Man page |
| bio,YaqcControlProbes-method | Man page |
| bio-methods | Man page |
| bioCalls | Man page |
| bioCalls,YAQCStats-method | Man page |
| class:YAQCStats | Man page |
| class:YaqcBioProbes | Man page |
| class:YaqcControlProbes | Man page |
| class:YaqcDegProbes | Man page |
| class:YaqcSpkProbes | Man page |
| deg | Man page |
| deg,YaqcControlProbes-method | Man page |
| deg,YaqcDegProbes-method | Man page |
| deg-methods | Man page |
| gcosProbes | Man page |
| gcosProbes,YAQCStats-method | Man page |
| getAllInt | Man page Source code |
| getAlpha1 | Source code |
| getAlpha2 | Source code |
| getBio | Source code |
| getBioProbes | Man page Source code |
| getDeg | Source code |
| getOutliers | Man page Source code |
| getQCRatios | Man page Source code |
| getQcdefData | Source code |
| getRatioProbes | Man page Source code |
| getSpikeProbes | Man page Source code |
| getSpk | Source code |
| getSpkProbes | Source code |
| getYaqcControlProbes | Man page Man page |
| getYaqcControlProbes,YAQCStats-method | Man page Man page |
| info | Man page |
| info,YaqcControlProbes-method | Man page |
| info<- | Man page |
| info<-,YaqcControlProbes-method | Man page |
| isLog | Man page |
| isLog,YAQCStats-method | Man page |
| merge,YAQCStats,YAQCStats-method | Man page |
| merge,YAQCStats-method | Man page |
| merge.yaqc | Source code |
| method:yaqc | Man page |
| minbg,YAQCStats-method | Man page |
| moreSpikeInProbes | Man page |
| moreSpikeInProbes,YAQCStats-method | Man page |
| objectVersion | Man page |
| objectVersion,YAQCStats-method | Man page Man page |
| percent.present,YAQCStats-method | Man page |
| plot,YAQCStats | Man page |
| plot,YAQCStats,missing-method | Man page |
| probeSelectionInterface | Man page Source code |
| reprodPlot | Man page |
| sfs,YAQCStats-method | Man page |
| show,YAQCStats-method | Man page |
| show,YaqcBioProbes-method | Man page |
| show,YaqcControlProbes-method | Man page |
| show,YaqcDegProbes-method | Man page |
| show,YaqcSpkProbes-method | Man page |
| spk | Man page |
| spk,YaqcControlProbes-method | Man page |
| spk,YaqcSpkProbes-method | Man page |
| spk-methods | Man page |
| summary,YAQCStats-method | Man page |
| target,YAQCStats-method | Man page |
| yaqc | Man page |
| yaqc,AffyBatch-method | Man page |
| yaqc,ExpressionSet-method | Man page |
| yaqc,eSet-method | Man page |
| yaqc-method | Man page |
| yaqc-methods | Man page |
| yaqc.affy | Man page Source code |
| yaqc.affy.affybatch | Source code |
| yaqc.affy.exprSet | Source code |
| yaqc.plot | Man page Source code |
| yaqc.plot.all | Source code |
| yaqc.plot.part | Source code |
| yaqc.show | Source code |
| yaqc.summary | Man page Source code |
