Biocview "ChIPchip"

LihuaJulieZhu/ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

jianhong/ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data

iChip

Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models

ChIPXpress

ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

metygl/ChIPXpress

ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

chroGPS

chroGPS2: Generation, visualization and differential analysis of epigenome maps

ibn-salem/chromloop

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

ibn-salem/sevenC

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

sevenC

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

rGADEM

de novo motif discovery

CharlesJB/mpiGadem

de novo motif discovery

minhanho/MotifFunc

Functionality Visualization for Motifs

les

Identifying Differential Effects in Tiling Microarray Data

alyst/MotIV

Motif Identification and Validation

MotIV

Motif Identification and Validation

jianhong/motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Starr

Simple tiling array analysis of Affymetrix ChIP-chip data