Description Usage Arguments Details Value Note Author(s) References See Also Examples

View source: R/Custom.functions.R

This function computes Akaike's information criterion (AIC), the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc) from user-supplied input instead of
extracting the values automatically from a model object. This
function is particularly useful for output imported from other
software or for model classes that are not currently supported by
`AICc`

.

1 2 | ```
AICcCustom(logL, K, return.K = FALSE, second.ord = TRUE, nobs = NULL,
c.hat = 1)
``` |

`logL` |
the value of the model log-likelihood. |

`K` |
the number of estimated parameters in the model. |

`return.K` |
logical. If |

`second.ord` |
logical. If |

`nobs` |
the sample size required to compute the AICc or QAICc. |

`c.hat` |
value of overdispersion parameter (i.e., variance inflation factor)
such as that obtained from |

`AICcCustom`

computes one of the following four information criteria:

Akaike's information criterion (AIC, Akaike 1973), the second-order or small sample AIC (AICc, Sugiura 1978, Hurvich and Tsai 1991), the quasi-likelihood AIC (QAIC, Burnham and Anderson 2002), and the quasi-likelihood AICc (QAICc, Burnham and Anderson 2002).

`AICcCustom`

returns the AIC, AICc, QAIC, or QAICc, or the number
of estimated parameters, depending on the values of the arguments.

The actual (Q)AIC(c) values are not really interesting in themselves, as they depend directly on the data, parameters estimated, and likelihood function. Furthermore, a single value does not tell much about model fit. Information criteria become relevant when compared to one another for a given data set and set of candidate models.

Marc J. Mazerolle

Akaike, H. (1973) Information theory as an extension of the maximum
likelihood principle. In: *Second International Symposium on
Information Theory*, pp. 267–281. Petrov, B.N., Csaki, F., Eds,
Akademiai Kiado, Budapest.

Burnham, K. P., Anderson, D. R. (2002) *Model Selection and
Multimodel Inference: a practical information-theoretic
approach*. Second edition. Springer: New York.

Dail, D., Madsen, L. (2011) Models for estimating abundance from
repeated counts of an open population. *Biometrics* **67**,
577–587.

Hurvich, C. M., Tsai, C.-L. (1991) Bias of the corrected AIC
criterion for underfitted regression and time series
models. *Biometrika* **78**, 499–509.

Lebreton, J.-D., Burnham, K. P., Clobert, J., Anderson, D. R. (1992)
Modeling survival and testing biological hypotheses using marked
animals: a unified approach with case-studies. *Ecological
Monographs* **62**, 67–118.

MacKenzie, D. I., Nichols, J. D., Lachman, G. B., Droege, S., Royle,
J. A., Langtimm, C. A. (2002) Estimating site occupancy rates when
detection probabilities are less than one. *Ecology* **83**,
2248–2255.

MacKenzie, D. I., Nichols, J. D., Hines, J. E., Knutson, M. G.,
Franklin, A. B. (2003) Estimating site occupancy, colonization, and
local extinction when a species is detected imperfectly. *Ecology*
**84**, 2200–2207.

Royle, J. A. (2004) *N*-mixture models for estimating population
size from spatially replicated counts. *Biometrics* **60**,
108–115.

Sugiura, N. (1978) Further analysis of the data by Akaike's
information criterion and the finite corrections. *Communications
in Statistics: Theory and Methods* **A7**, 13–26.

`AICc`

, `aictabCustom`

, `confset`

,
`evidence`

, `c_hat`

, `modavgCustom`

1 2 3 4 5 6 7 8 9 10 11 12 13 | ```
##cement data from Burnham and Anderson (2002, p. 101)
data(cement)
##run multiple regression - the global model in Table 3.2
glob.mod <- lm(y ~ x1 + x2 + x3 + x4, data = cement)
##extract log-likelihood
LL <- logLik(glob.mod)[1]
##extract number of parameters
K.mod <- coef(glob.mod) + 1
##compute AICc with full likelihood
AICcCustom(LL, K.mod, nobs = nrow(cement))
``` |

```
(Intercept) x1 x2 x3 x4
21.76728 60.85642 57.57978 56.46556 55.83366
```

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