API for ALDEx3
Linear Models for Sequence Count Data

Global functions
.aldex_contrast_labels Source code
.aldex_effect_overlap Source code
.aldex_pooled_var Source code
.aldex_resolve_contrast Source code
.draw_scale_mvn Source code
.resolve_scale_uncertainty Source code
.upgrade_deprecated_scale_args Source code
.validate_scale_covariance Source code
.validate_scale_mean Source code
.validate_scale_sd Source code
.validate_scale_variance Source code
`%||%` Source code
aitchison.mean Source code
aldex Man page Source code
aldex.effect Man page Source code
aldex.lm.sim.clr Man page Source code
aldex.mem.sim Man page Source code
aldex.plot Man page Source code
aldex.pvals Man page Source code
aldex.sampler Source code
array_to_df Source code
blmm Man page
blmm_parse_formula Source code
blmm_random_effect_vector Source code
center.sm Source code
clr.sm Man page Source code
coefficient.sm Man page Source code
cohensd Man page Source code
combine.streams Man page Source code
compute_basis_blmm Source code
fflm Man page Source code
gut_crohns_data Man page
miniclo Man page Source code
oral_mouthwash_data Man page
phi_to_theta_blmm Source code
rLogDirichlet Man page Source code
req Man page Source code
sample.sm Man page Source code
sr.mem Man page Source code
summary.aldex Man page Source code
theta_to_phi_blmm Source code
tss.sm Man page Source code
ALDEx3 documentation built on Oct. 20, 2026, 1:07 a.m.