Man pages for ALDEx3
Linear Models for Sequence Count Data
| aldex | ALDEx3 Linear Models |
| aldex.effect | ALDEx3 Effect Diagnostics |
| aldex.lm.sim.clr | Simulation function soley for testing and exploring ALDEx3,... |
| aldex.mem.sim | Simulation for testing mixed effects models. |
| aldex.plot | Plot Method for ALDEx3 objects with pairwise comparisons |
| aldex.pvals | Calculate p-values adjusting for changes in sign as described... |
| blmm | Fast approximate mixed-effects engine for ALDEx3. |
| clr.sm | CLR-based scale model |
| coefficient.sm | Scale model using prior information about groups or... |
| cohensd | Cohen's D |
| combine.streams | Combine output from aldex streams (internal only) |
| fflm | Freaking Fask Linear Models |
| gut_crohns_data | Gut Crohn's microbiome dataset (list) |
| miniclo | Closure operation |
| oral_mouthwash_data | Oral microbiome perturbation dataset (list) |
| req | Test object contains elements |
| rLogDirichlet | Function for sampling Dirichlet random variables (base-2... |
| sample.sm | Per-sample scale model using external information |
| sr.mem | Implementation of SR-MEM: scale-reliant mixed effects models. |
| summary.aldex | Summary Method for ALDEx3 Objects |
| tss.sm | TSS-centered scale model |
