availability: Check Availability of Columns

In AMR: Antimicrobial Resistance Data Analysis

Check Availability of Columns

Description

Easy check for data availability of all columns in a data set. This makes it easy to get an idea of which antimicrobial combinations can be used for calculation with e.g. susceptibility() and resistance().

Usage

availability(tbl, width = NULL)

Arguments

tbl	a data.frame or list
width	number of characters to present the visual availability - the default is filling the width of the console

Details

The function returns a data.frame with columns "resistant" and "visual_resistance". The values in that columns are calculated with resistance().

Value

data.frame with column names of tbl as row names

Examples

availability(example_isolates)

if (require("dplyr")) {
  example_isolates %>%
    filter(mo == as.mo("Escherichia coli")) %>%
    select_if(is.sir) %>%
    availability()
}

AMR documentation built on Oct. 22, 2023, 1:08 a.m.