Man pages for AMR
Antimicrobial Resistance Analysis

abnameName of an antibiotic
ab_propertyProperty of an antibiotic
AMRThe 'AMR' Package
AMR-deprecatedDeprecated functions
antibioticsData set with 423 antibiotics
as.atcTransform to ATC code
as.micClass 'mic'
as.moTransform to microorganism ID
as.rsiClass 'rsi'
atc_propertyProperties of an ATC code
countCount isolates
eucast_rulesEUCAST rules
first_isolateDetermine first (weighted) isolates
freqFrequency table
get_localeGet language for AMR
ggplot_rsiAMR bar plots with 'ggplot'
g.test_G_-test for Count Data
joinJoin a table with 'microorganisms'
key_antibioticsKey antibiotics for first _weighted_ isolates
kurtosisKurtosis of the sample
likePattern Matching
mdroDetermine multidrug-resistant organisms (MDRO)
microorganismsData set with taxonomic data from ITIS
microorganisms.certeTranslation table for Certe
microorganisms.oldData set with old taxonomic data from ITIS
microorganisms.umcgTranslation table for UMCG
mo_propertyProperty of a microorganism
portionCalculate resistance of isolates
p.symbolSymbol of a p value
read.4DRead data from 4D database
resistance_predictPredict antimicrobial resistance
rsiCalculate resistance of isolates
septic_patientsData set with 2000 blood culture isolates of septic patients
skewnessSkewness of the sample
supplementary_dataSupplementary Data
AMR documentation built on Nov. 30, 2018, 4:22 p.m.