API for APIS
Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents
| Global functions | |
|---|---|
| .onAttach | Source code |
| APIS_2n | Man page Source code |
| APIS_3n | Man page Source code |
| APIS_dam | Man page |
| APIS_offspring | Man page |
| APIS_offspring3n | Man page |
| APIS_sire | Man page |
| Run_formating | Source code |
| assignment_power | Man page Source code |
| check_genotypes | Source code |
| check_input_parameters | Source code |
| check_matrices_format | Source code |
| create_pedigree_delta | Source code |
| create_pedigree_exclusion | Source code |
| create_pedigree_probability | Source code |
| estimate_exclusion_threshold | Source code |
| estimate_mendel_threshold | Source code |
| estimate_missing_parents | Source code |
| find_delim | Source code |
| format_logfile | Source code |
| get_allele_frequencies | Source code |
| get_assignment_rate | Source code |
| get_individual_probability_2n | Source code |
| get_individual_probability_3n | Source code |
| get_probabilities_parallel_2n | Source code |
| get_probabilities_parallel_3n | Source code |
| get_variant_dataframe | Source code |
| import_from_ped | Man page Source code |
| import_from_vcf | Man page Source code |
| launch_APIShiny | Man page Source code |
| mutate_allele | Source code |
| personal_threshold | Source code |
| plot_delta | Man page Source code |
| plot_mismatches | Man page Source code |
| plot_probabilities | Man page Source code |
| prepare_for_assignment | Source code |
| print_summary | Source code |
| print_title | Source code |
| recode_allele_frequencies_for_assignment | Source code |
| recode_genotypes_for_assignment_2n | Source code |
| recode_genotypes_for_assignment_3n | Source code |
| remove_simulation | Source code |
| simulate_offspring | Man page Source code |
