import_from_ped: Import from Plink .ped

In APIS: Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

Import from Plink .ped

Description

Import from Plink .ped

Usage

import_from_ped(
  ped_file,
  no_fid = FALSE,
  no_parents = FALSE,
  no_sex = FALSE,
  no_pheno = FALSE,
  marker_names = NULL
)

Arguments

ped_file	name of the ped file (from Plink)
no_fid	if "no_fid" parameter was used in plink (default : FALSE)
no_parents	if "no_parents" parameter was used in plink (default : FALSE)
no_sex	if "no_sex" parameter was used in plink (default : FALSE)
no_pheno	if "no_pheno" parameter was used in plink (default : FALSE)
marker_names	list of marker names (default : NULL)

Value

matrix of genotypes for APIS

APIS documentation built on Nov. 23, 2023, 5:06 p.m.