simulate_offspring: Simulate offspring

In APIS: Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

Simulate offspring

Description

Simulate offspring

Usage

simulate_offspring(
  sire_genotype,
  dam_genotype,
  number_offspring,
  ploidy_level = 2,
  sire_contribution = 1,
  dam_contribution = 1,
  recombination_rate = 0.5,
  genotyping_error = 0.01
)

Arguments

sire_genotype	sire genotype
dam_genotype	dam genotype
number_offspring	number of offspring to simulate
ploidy_level	ploidy level of offspring
sire_contribution	sire contribution
dam_contribution	dam contribution
recombination_rate	recombination rate (only important for tri/tetra ploids offspring)
genotyping_error	genotyping error

Value

list with matrix with simulated offspring and pedigree

Examples

data("APIS_sire")
data("APIS_dam")

# For diploide offspring
simulate_offspring(sire_genotype=APIS_sire, dam_genotype=APIS_dam,
                   number_offspring=10,
                   ploidy_level = 2,
                   sire_contribution = 1, dam_contribution = 1,
                   recombination_rate = 0.5,
                   genotyping_error = 0.01)

# For triploide offspring
simulate_offspring(sire_genotype=APIS_sire, dam_genotype=APIS_dam,
                   number_offspring=10,
                   ploidy_level = 3,
                   sire_contribution = 1, dam_contribution = 2,
                   recombination_rate = 0.5,
                   genotyping_error = 0.01)

APIS documentation built on Nov. 23, 2023, 5:06 p.m.