drosophila: Drosphila life cycyle time series by Arbeitman et al 2002.

In ARTIVA: Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model

Description

Gene expression time series for 4028 genes involved in the life cycle of Drosophila melanogaster. The microarray data measured gene expression levels during all four major stages of morphogenesis: embryo, larva, pupa and adult (67 time points). Data published in Arbeitman et al. (2002) and used in Lebre et al. (2010)

Usage

data(drosophila)

Format

A matrix of 4028 row (genes) by 67 columns (timepoints) containing the gene expression time series.

Source

The data has been published in Arbeitman et al (2002).

References

Gene expression during the life cycle of Drosophila melanogaster. M.N Arbeitman, E.E.M. Furlong, F. Imam, E. Johson, B.H. Null, B.S. Baker, M.A. Krasnow, M.P. Scott, R.W. Davis and K.P. White. Science, 297(5590):2270-2275, 2002.

Statistical inference of the time-varying structure of gene-regulation networks S. Lebre, J. Becq, F. Devaux, M. P. H. Stumpf, G. Lelandais, BMC Systems Biology, 2010, 4:130.

Examples

#load the data
data(drosophila)

#plot time serie for a chosen gene 
gene=1
plot(1:67,drosophila[gene,],type="l",xlab="Timepoints", ylab="LogRatio",
main=row.names(drosophila)[gene])

Example output

Loading required package: MASS
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

ARTIVA documentation built on May 1, 2019, 6:31 p.m.