check_problems: Check problems in output of 'clean_metadata()'

In ARUtools: Management and Processing of Autonomous Recording Unit (ARU) Data

Check problems in output of clean_metadata()

Description

Cleaning metadata can take a series of tries. This function helps summarize and explore missing metadata (problems).

Usage

check_problems(
  df,
  check = c("site_id", "aru_id", "date", "date_time", "longitude", "latitude"),
  path = FALSE,
  date = FALSE
)

Arguments

df	Data frame. Either meta data (clean_metadata()) or GPS coordinates (clean_gps())
check	Character. Character vector of columns to check for missing values. Default is site_id, aru_id, date, date_time, longitude and latitude.
path	Logical. Whether to return just the file paths which have missing attributes. Default FALSE
date	Logical. Whether to summarize output by date (as well as site_id and aru_id. Default FALSE.

Value

A data frame summarizing the metadata by site_id, aru_type, aru_id, and (optionally) by date. Presents the number of files, directories, and days worth of recordings, as well as the minimum and maximum recording times.

Examples

m <- clean_metadata(project_files = example_files, pattern_aru_id = "test")

check_problems(m)
check_problems(m, date = TRUE)
check_problems(m, path = TRUE)

ARUtools documentation built on Oct. 9, 2024, 1:07 a.m.