ASPBay: Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data
Version 1.2

This package allows to make inference on the properties of causal genetic variants in linkage disequilibrium with genotyped markers. In a first step, we select a subset of variants using a score statistic for affected sib-pairs. In a second step, on the selected subset, we make inference on causal genetic variants in the considered region.

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AuthorClaire Dandine-Roulland
Date of publication2015-01-14 19:24:22
MaintainerClaire Dandine-Roulland <claire.Dandine-Roulland@inserm.fr>
LicenseGPL-2
Version1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ASPBay")

Man pages

ASP.Bayesian: Samples in the posterior distribution of the frequencies and...
ASPBay-package: Bayesian method with affected sib pairs
ASPData: Simulated dataset
ASP.Score: Score test of association
ASP.Selection: Select a subset of SNPs
Graphs.Bayesian: Graphs

Functions

ASP.Bayesian Man page
ASP.Score Man page
ASP.Bayesian Source code
ASP.Score Source code
ASP.Selection Man page Source code
ASPBay Man page
ASPBay-package Man page
ASPData Man page
Graphs.Bayesian Man page Source code
colorhex Source code
cred_int Source code
graph_cred_int Source code

Files

inst
inst/doc
inst/doc/ASPBay.R
inst/doc/ASPBay.Rnw
inst/doc/ASPBay.pdf
src
src/Makevars
src/MH.cpp
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
data
data/ASPData.rda
R
R/ASP.Selection.R
R/cred_int.R
R/ASP.Bayesian.R
R/graph_cred_int.R
R/Graphs.Bayesian.R
R/colorhex.R
R/ASP.Score.R
vignettes
vignettes/LD.png
vignettes/ASPBay.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ASP.Bayesian.Rd
man/ASPData.Rd
man/Graphs.Bayesian.Rd
man/ASPBay-package.Rd
man/ASP.Selection.Rd
man/ASP.Score.Rd
ASPBay documentation built on May 19, 2017, 9:45 p.m.