ASPBay: Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data

This package allows to make inference on the properties of causal genetic variants in linkage disequilibrium with genotyped markers. In a first step, we select a subset of variants using a score statistic for affected sib-pairs. In a second step, on the selected subset, we make inference on causal genetic variants in the considered region.

Author
Claire Dandine-Roulland
Date of publication
2015-01-14 19:24:22
Maintainer
Claire Dandine-Roulland <claire.Dandine-Roulland@inserm.fr>
License
GPL-2
Version
1.2

View on CRAN

Man pages

ASP.Bayesian
Samples in the posterior distribution of the frequencies and...
ASPBay-package
Bayesian method with affected sib pairs
ASPData
Simulated dataset
ASP.Score
Score test of association
ASP.Selection
Select a subset of SNPs
Graphs.Bayesian
Graphs

Files in this package

ASPBay
ASPBay/inst
ASPBay/inst/doc
ASPBay/inst/doc/ASPBay.R
ASPBay/inst/doc/ASPBay.Rnw
ASPBay/inst/doc/ASPBay.pdf
ASPBay/src
ASPBay/src/Makevars
ASPBay/src/MH.cpp
ASPBay/src/Makevars.win
ASPBay/src/RcppExports.cpp
ASPBay/NAMESPACE
ASPBay/data
ASPBay/data/ASPData.rda
ASPBay/R
ASPBay/R/ASP.Selection.R
ASPBay/R/cred_int.R
ASPBay/R/ASP.Bayesian.R
ASPBay/R/graph_cred_int.R
ASPBay/R/Graphs.Bayesian.R
ASPBay/R/colorhex.R
ASPBay/R/ASP.Score.R
ASPBay/vignettes
ASPBay/vignettes/LD.png
ASPBay/vignettes/ASPBay.Rnw
ASPBay/MD5
ASPBay/build
ASPBay/build/vignette.rds
ASPBay/DESCRIPTION
ASPBay/man
ASPBay/man/ASP.Bayesian.Rd
ASPBay/man/ASPData.Rd
ASPBay/man/Graphs.Bayesian.Rd
ASPBay/man/ASPBay-package.Rd
ASPBay/man/ASP.Selection.Rd
ASPBay/man/ASP.Score.Rd