Ac3net.filtersames: The correlations of the same variables are set to zero.

In Ac3net: Inferring Directional Conservative Causal Core Gene Networks

Description

Ac3net.filtersames The correlations of the same variables are set to zero as they are likly to have the maximum correlations already.

Usage

Ac3net.filtersames(mim)

Arguments

mim	An adjacency matrix, where the element at row i and column j corresponds to the correlation or mutual information between variables row i and column j. Row and columns of the matrix must have the variable names. Row names must be available.

Details

Ac3net.filtersames takes an adjacency matrix with variable names are on the rows. Then it sets 0 for the self correlations of the variables by checking their names.

Value

Ac3net.filtersames returns an adjacency matrix with no self dependency.

Author(s)

Gokmen Altay

References

G. Altay,"Directed Conservative Causal Core Gene Networks", bioRxiv, 2018.

See Also

Ac3net.maxmim, Ac3net.commonlinks,

Examples

# data(expdata)
# mim <- cor(t(expdata), method = 'pearson')
# mim <- Ac3net.filtersames(mim)

Ac3net documentation built on May 2, 2019, 6:54 a.m.