zeroindx: The indices to force to zero correlations.

In Ac3net: Inferring Directional Conservative Causal Core Gene Networks

Description

The indices to force to zero correlations of E.coli expresseion data. Because REgulonDB database provided only TF-TF or TF-gene interactions. We need to remove gene-gene interactions before the performance analysis.

Usage

data("zeroindx")

Details

The indices to force to zero correlations of E.coli expresseion data. Because REgulonDB database provided only TF-TF or TF-gene interactions. We need to remove gene-gene interactions before the performance analysis. These indice are also from (Faith, 2007), available along with the expression data.

Source

This data was downloaded from m3d.mssm.edu/network_inference.html .

References

Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol. 2007 Jan;5(1):e8

Examples

#data(zeroindx)

Ac3net documentation built on May 2, 2019, 6:54 a.m.