NEWS.md

In AgroR: Experimental Statistics and Graphics for Agricultural Sciences

AgroR 1.3.5

• Fixed test_two function bug for paired data.

• Implemented the option to merge non-parametric and parametric tests in barplot_positive

AgroR 1.3.4

• Fixed the following error: The Scott-Knott test failed when data are transformed for factorial and split-plot schemes.

• As suggested by users, the names.factor argument was implemented to change the name of factors in the output of functions that encompass more than one factor

• Fixed function summarise_anova in case of analysis using kruskal-wallis test

AgroR 1.3.3

• Fixed residual graph bug for FAT2DIC, FAT2DBC, PSUBDIC, PSUBDBC, FAT2DIC.ad, FAT2DBC.ad, FAT3DIC, FAT3DBC, FAT3DIC.ad, FAT3DBC .ad when data is unsorted or ordered by block.

• ylim argument have been implemented in dic, dbc and dql function.

• fixed bug when transf is set to "angular"

• Sum of a constant is now available in all experimental projects

AgroR 1.3.2

• dic.ad and dbc.ad function bug fixed

• Added to quantfat2desd and jointcluster functions

• The conjdic and conjdbc functions have been improved

AgroR 1.3.1

• fix a bug in barplot_positive

• Fixed DIC, DBC and DQL function bug when point="mean_se" and factor is qualitative

• Now point in the FAT2DIC, FAT2DBC, FAT2DIC.ad, FAT2DBC.ad, FAT3DIC, FAT3DBC, FAT3DIC.ad, FAT3DBC.ad, PSUBDIC and PSUBDBC functions use the point argument ("mean_sd" or "mean_se") to define the information that will be used in the error bars in qualitative factors.

• FAT2DBC.ad function sum of squares and degree of freedom bug fixed

• The conjfat2dbc function has been implemented

• The dic.ad and dbc.ad function has been implemented

• The shiny app has been translated into English

AgroR 1.3.0

• Fixed sk_graph function offset

• Added ibarplot_double function

• Added bargraph2 function

• plot_jitter has been improved

• fixed significance level bug for Dunnett's test (dunnett function)

AgroR 1.2.9

• Fix a bug standard residuals graph in functions FAT2DIC, FAT2DBC, FAT2DIC.ad, FAT2DBC.ad, FAT3DIC, FAT3DBC, FAT3DIC.ad, FAT3DBC.ad, PSUBDIC and PSUBDBC

• fix a bug in double interaction significant in FAT3DIC,FAT3DBC,FAT3DIC.ad and FAT3DIC.ad

AgroR 1.2.8

Minor changes

• The sorting bug in the case of factorial designs including functions FAT2DIC, FAT2DBC, FAT2DIC.ad, FAT2DBC.ad, FAT3DIC, FAT3DBC, FAT3DIC.ad, FAT3DBC.ad, PSUBDIC and PSUBDBC has been fixed. Now the final worksheet, when meaningful interaction doesn't go wrong when the user supplies input parameters in a disorderly fashion.

• axissize argument has been added to the sketch function

• summarise_dunnett has been added

AgroR 1.2.7

• Add labelsize argument in FAT2DIC, FAT2DBC, PSUBDIC, PSUBDBC, FAT3DIC, FAT3DBC, FAT2DIC.ad, FAT2DBC.ad, FAT3DIC.ad and FAT3DBC.ad

• Add xlab.factor argument in FAT2DIC, FAT2DBC, PSUBDIC, PSUBDBC, FAT3DIC, FAT3DBC, FAT2DIC.ad, FAT2DBC.ad, FAT3DIC.ad and FAT3DBC.ad

• The output of the desc3fat function has been improved

• The sketch of a strip-plot has been added to the sketch function

• Analysis of variance of the strip-plot scheme has been added in STRIPLOTfunction

• It is now possible to add the degree of the polynomial for each type of interaction in the case of quantitative factor.

AgroR 1.2.6

• The bargraph_onefactor and bargraph_twofactor functions have been implemented

• The bug of sorting to FAT3DBC in case of significant interaction has been fixed

AgroR 1.2.5

• The FAT2DIC.art and FAT2DBC.art functions have been discontinued

• Dependencies ARTool, reshape2, Hmisc, stringr and ScottKnott have been removed

• Bug fixing conjdic and conjdbc functions for linux

AgroR 1.2.4

• The .welcome startup function has been removed

• The dunn function has been added.

• LSD testing on FAT2DBC was added

• Dependence on the grid and gridExtra packages have been removed. Functions with more than one graph are now joined by the cowplot package.

• Added add.letters argument in DICT, DBCT and DQLT function.

AgroR 1.2.3

• Added the soybean dataset

• Added the bean dataset

• Added the corn dataset

• Added the covercrops dataset

• Added the orchard dataset

• Added the pepper dataset

• The summarise_anova function was implemented, which performs a summary of the outputs of the DIC, DBC and DQL functions, when the factor is qualitative. In the case of FAT2DIC, FAT2DBC, PSUBDIC and PSUBDBC a summary of the analysis of variance frame is returned.

• Fixed bug of conjdic and conjdbc functions in case of analysis of separate experiments.

• Now for DIC, DBC, DQL, FAT2DIC, FAT2DBC, FAT3DIC and FAT3DBC functions, the standardized residual graph is returned in list form, before the graphs.

• The standardized residual graph for the PSUBDIC and PSUBDBC functions was implemented

AgroR 1.2.2

• Scott-Knott's test has been improved. Now composite names can be used in factor vectors.

• Fixed the FAT2DIC.art function bug

• PCA_function function was implemented

AgroR 1.2.1

Minor changes

• Correction of CV for FAT2DIC and FAT2DBC. Before, I was extracting the QM from the interaction by making the QM from the residue.

• The transf function suggestion issue has been fixed.

• The linesize argument was implemented in polynomial, polynomial2 and polynomial2_color

AgroR 1.2.0

Major changes

• Added the emerge dataset

• TBARPLOT.reverse function was implemented

• FAT2DIC.ad and FAT2DBC.ad function was implemented

• The polynomial and polynomial2 functions have been improved

• When a significant double interaction is found when one of the factors is quantitative, it now performs multiple comparisons of the other factor within each level of the quantitative factor.

• The PSUBSUB function bugs have been fixed. In addition, the function returns breakdown of the analysis of variance, assumptions, and additional information.

• dunnett function was implemented

• cor_ic function was implemented

• bar_graph function was implemented

• seg_graph function was implemented

• The graphical output of the conjdic and conjdbc functions has been changed. It is now possible to use the outputs of these functions in sk_graph, radargraph and barplot_positive.

• Now FAT2DIC, FAT2DBC, PSUBDIC, PSUBDBC, FAT3DIC and FAT3DBC can be used in the sk_graph, radargraph and barplot_positive commands, in cases of significant isolated effect.

AgroR 1.1.0

Major changes

• More graphical arguments were added to the commands, such as angle.label.

• The layout of the variance analysis output in the conjdic and conjdbc commands has been changed.

• The variation coefficient (CV %) was added in the DICT, DBCT and DQLT functions.

• Analysis using a generalized linear model of the binomial or poisson family was added for a completely randomized design (DIC.glm) in randomized blocks (DBC.glm) with a factor of interest.

• Additional information was inserted in FAT2DIC, FAT2DBC, FAT3DIC and FAT3DBC.

• plot_cor function has been added.

• plot_jitter function has been added.

• Graphics themes default has been changed from theme_bw to theme_classic.

• The graphical output of standardized graphics residues for ggplot2 has been changed.

• The aristolochia dataset has been added

• The aacp function has been added, which calculates the area under the progress curve

Bug fixes

• The bar width error in the polynomial and polynomial2 commands has been fixed and can now be defined by the width.bar argument.

• The mean and general median of the DIC, DBC and DQL commands have been corrected. The function returned the measurements of the transformed data.

AgroR documentation built on Sept. 14, 2023, 1:09 a.m.