AlgebraicHaploPackage: Haplotype Two Snips Out of a Paired Group of Patients

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Two unordered pairs of data of two different snips positions is haplotyped by resolving a small number ob closed equations.

Author
Jan Wolfertz
Date of publication
2015-10-31 08:46:53
Maintainer
Jan Wolfertz <Jan.wolfertz@uni-duesseldorf.de>
License
GPL-2
Version
1.2

View on CRAN

Man pages

AlgebraicHaploPackage-package
AlgebraicHaploPackage- The package haplotype a contingency of...
callhaplotype
calcultes the cotigency table of the haplotypes
cubic
Function that can resolve the cubic equation numerical stable...
findoptimal
Chose the most likely solution of the three potential onces.
haplotypeit
Haplotype a 3 x 3 counting matrix.
optimalfrequency
Evaluate potential haplotypes.

Files in this package

AlgebraicHaploPackage
AlgebraicHaploPackage/inst
AlgebraicHaploPackage/inst/doc
AlgebraicHaploPackage/inst/doc/algebraichaplo.Rnw
AlgebraicHaploPackage/inst/doc/algebraichaplo.pdf
AlgebraicHaploPackage/inst/testcalls.R
AlgebraicHaploPackage/NAMESPACE
AlgebraicHaploPackage/R
AlgebraicHaploPackage/R/AlgebraicHaplo.R
AlgebraicHaploPackage/vignettes
AlgebraicHaploPackage/vignettes/algebraichaplo.Rnw
AlgebraicHaploPackage/vignettes/Bibliography.bib
AlgebraicHaploPackage/MD5
AlgebraicHaploPackage/build
AlgebraicHaploPackage/build/vignette.rds
AlgebraicHaploPackage/DESCRIPTION
AlgebraicHaploPackage/man
AlgebraicHaploPackage/man/cubic.Rd
AlgebraicHaploPackage/man/haplotypeit.Rd
AlgebraicHaploPackage/man/findoptimal.Rd
AlgebraicHaploPackage/man/callhaplotype.Rd
AlgebraicHaploPackage/man/optimalfrequency.Rd
AlgebraicHaploPackage/man/AlgebraicHaploPackage-package.Rd