optimalfrequency: Evaluate potential haplotypes.
In AlgebraicHaploPackage: Haplotype Two Snips Out of a Paired Group of Patients
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
View source: R/AlgebraicHaplo.R
Description
Calculate the difference of a known haplotype and the resulting unordered pair of snip pairs.
Usage
1
optimalfrequency(mm, mmorg)
Arguments
mm
This is a contigency table of two haplotype snips.
2x2 matrix or ndata.frame
mmorg
This is a contigency table of two diplotype snips pairs.
Details
The average squared distance to the expected result 3x3 table is used as a T statistic. The p value not to be zero is calculated.
The higher the p value the more exact is the haplotype.
Value
A list of values is returned.
result\$LK
Linkage disequilibrium
result\$Testvalue
The squared sitance multiplied by the number of entries in 3x3 matrix mmorg
result\$prSimilarByChange
The probability not o be equal to zero by change.
Author(s)
Jan wolfertz.
References
Stahel: Statistik fuer Naturwissenschaftler und Medizinier, pp. 107-120.
See Also
findoptimal
AlgebraicHaploPackage documentation built on May 2, 2019, 7:27 a.m.
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Description Usage Arguments Details Value Author(s) References See Also
View source: R/AlgebraicHaplo.R
Description
Calculate the difference of a known haplotype and the resulting unordered pair of snip pairs.
Usage
1 | optimalfrequency(mm, mmorg)
|
Arguments
mm |
This is a contigency table of two haplotype snips. 2x2 matrix or ndata.frame |
mmorg |
This is a contigency table of two diplotype snips pairs. |
Details
The average squared distance to the expected result 3x3 table is used as a T statistic. The p value not to be zero is calculated. The higher the p value the more exact is the haplotype.
Value
A list of values is returned.
result\$LK |
Linkage disequilibrium |
result\$Testvalue |
The squared sitance multiplied by the number of entries in 3x3 matrix mmorg |
result\$prSimilarByChange |
The probability not o be equal to zero by change. |
Author(s)
Jan wolfertz.
References
Stahel: Statistik fuer Naturwissenschaftler und Medizinier, pp. 107-120.
See Also
findoptimal
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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