findoptimal: Chose the most likely solution of the three potential onces.
In AlgebraicHaploPackage: Haplotype Two Snips Out of a Paired Group of Patients

Description Usage Arguments Details Value Author(s) Examples

View source: R/AlgebraicHaplo.R

Starting with a 3x3 matrix, three potential haplotypes 2x2 matrices will be calculted and evaluated. The most likly one is choosen. A dicrete solution values are not enforced. This reduces increases the right prediction on real data.

1	findoptimal(A, B, C, D, mmorg, exact = 1e-05)

`A`	Firts entry of the 2x2 matrix.
`B`	Second numeric entry of teh 2x2 matrix.
`C`	Third numeric entry of the 2x2 matrix.
`D`	Last numeric entry of the 2x2 matrix.
`mmorg`	3x3 matrix of the pair of original snip pairs.
`exact`	`exact` is a parameter when data are assumed to be equal. Acutually 1e-5 is taken. Should not be larger than the invers of four times the number of people.

It chose the 2x2 model of haplotypes with the smallest prediction error.

`AA`	Coefficient of x^3
`BB`	Coefficient of x^2
`CC`	Coefficient of x
`DD`	Coefficient of the intercept

Jan wolfertz

dd2=matrix(c(4,0,0,0,30,0,0,0,23),ncol=3,byrow=TRUE)
A=c(38+0i,2+12.1655i,2-12.1655i)
B=c(0+0i,36-12.1655i,36+12.1655i)
C=c(0+0i,36-12.1655i,36+12.1655i)
D=c(76+0i,40+12.1655i,40-12.1655i)