Chose the most likely solution of the three potential onces.
Description
Starting with a 3x3 matrix, three potential haplotypes 2x2 matrices will be calculted and evaluated. The most likly one is choosen. A dicrete solution values are not enforced. This reduces increases the right prediction on real data.
Usage
1  findoptimal(A, B, C, D, mmorg, exact = 1e05)

Arguments
A 
Firts entry of the 2x2 matrix. 
B 
Second numeric entry of teh 2x2 matrix. 
C 
Third numeric entry of the 2x2 matrix. 
D 
Last numeric entry of the 2x2 matrix. 
mmorg 
3x3 matrix of the pair of original snip pairs. 
exact 

Details
It chose the 2x2 model of haplotypes with the smallest prediction error.
Value
AA 
Coefficient of x^3 
BB 
Coefficient of x^2 
CC 
Coefficient of x 
DD 
Coefficient of the intercept 
Author(s)
Jan wolfertz
Examples
1 2 3 4 5 