Man pages for AnalyzeFMRI
Functions for Analysis of fMRI Datasets Stored in the ANALYZE or NIFTI Format

analyze2niftiCreate a NIFTI file from an Analyze file
centeringcentering
cluster.thresholdCluster threshold an array.
cov.estEstimates the covariance between neighbouring voxels
diminfo2fpsdiminfo2fps
EC.3DExpected Euler Characteristic for a 3D Random Field
eigenvalueseigenvalues
f.analyze.file.summaryprints summary of .img file contents
f.analyzeIO.guistarts AnalyzeFMRI GUI
f.basic.hdr.list.createcreates basic .hdr list in ANALYZE format
f.basic.hdr.nifti.list.createcreates basic .hdr list in NIFTI format
f.complete.hdr.nifti.list.createcreates complete .hdr list in NIFTI format
f.ica.fmriApplies Spatial ICA (Independent Component Analysis) to fMRI...
f.ica.fmri.guitcltk GUI to apply ICA to fMRI datasets
f.icast.fmriApplies Spatial or Temporal ICA (Independent Component...
f.icast.fmri.guitcltk GUI to apply Spatial or Temporal ICA to fMRI NIFTI...
f.nifti.file.summaryprints summary of .img file contents
fourDto2DfourDto2D
f.plot.ica.fmriPlots a specified component from the output of f.ica.fmri
f.plot.ica.fmri.jpgPlot the components of the ouput of f.ica.fmri to a series of...
f.plot.volume.guitcltk GUI to display FMRI or MRI images
fps2diminfofps2diminfo
f.read.analyze.headerread Analyze header file
f.read.analyze.sliceread one slice from a .img file
f.read.analyze.slice.at.all.timepointsreads a slice at all time points from a .img file
f.read.analyze.tptRead in a volume at one time point
f.read.analyze.tsread in one voxel time series
f.read.analyze.volumeread whole .img file
f.read.headerread ANALYZE or NIFTI header file
f.read.nifti.headerread Nifti header file
f.read.nifti.sliceread one slice from a .img or .nii file in NIFTI format
f.read.nifti.slice.at.all.timepointsreads a slice at all time points from a NIFTI .img or .nii...
f.read.nifti.tptRead in a volume at one time point
f.read.nifti.tsread in one voxel time series
f.read.nifti.volumeread whole image file
f.read.volumeread whole image file
f.spectral.summaryplots graphical summary of spectral properties of an fMRI...
f.spectral.summary.niftiplots graphical summary of spectral properties of an fMRI...
f.write.analyzewrites an array to a .img/.hdr pair in ANALYZE format
f.write.array.to.img.2byteswrite array of 2 byte integers
f.write.array.to.img.8bitwrite array of 1 byte integers
f.write.array.to.img.floatwrite array of 4 byte floats
f.write.list.to.hdrwrites a .hdr file in ANALYZE format
f.write.list.to.hdr.niftiwrites a .hdr file in NITI format
f.write.niftiwrites an array to a .img/.hdr pair in NIFTI format or to a...
f.write.nii.array.to.img.2byteswrite array of 2 byte integers and add at the begining of the...
f.write.nii.array.to.img.8bitwrite array of 1 byte integers and add at the begining of the...
f.write.nii.array.to.img.floatwrite array of 4 byte floats and add at the begining of the...
GaussSmoothArraySpatially smooth an array with Gaussian kernel.
GaussSmoothKernelCalculates a discrete Gaussian smoothing kernel.
ICAspatICAspat
ICAtempICAtemp
ijk2xyzijk2xyz
magicfieldGet magicfield from the header of an image file
mat34.to.TRSZAffine 4x4 (or 3x4) matrix to Translation, Rotation, Shear...
mat34.to.TZSRAffine 4x4 (or 3x4) matrix to Translation, Scale, Shear and...
model.2.cov.funcCalculates covariance from Hartvig Model 2
model.2.est.gammaEstimate gamma for Model 2 of Hartvig and Jensen (2000)
N2GFits the N2G model
N2G.Class.ProbabilityPosterior Probabilities for N2G model
N2G.DensityCalculates the density function for the N2G model
N2G.FitOptimzation function for N2G model
N2G.InverseTransform parameters of N2G model back to their real domains
N2G.LikelihoodCalculates the (negative) Likelihood of the N2G model
N2G.Likelihood.RatioN2G Likelihood Ratio's
N2G.RegionN2G Normal component interval
N2G.Spatial.MixturefMRI Spatial Mixture Modelling
N2G.TransformTransform parameters of N2G model so as to lie on the real...
nifti.quatern.to.mat44Quaternion (etc..) to affine 4x4 matrix
NonLinearSmoothArrayNon-linear spatial smmothing of 3D and 4D arrays.
orientationOrientation storage
Q2RQuaternion to rotation
R2QRotation to quaternion
reductionreduction
Sim.3D.GammaRFSimulate Gamma distributed Random Field
Sim.3D.GRFSimulate a GRF
SmoothEstEstimate the variance-covariance matrix of a Gaussian random...
st2xyztst2xyzt
threeDto4DthreeDto4D
Threshold.BonferroniCalculates Bonferroni Threshold
Threshold.FDRFalse Discovery Rate (FDR) Threshold
Threshold.RFRandom Field Theory Thersholds.
twoDto4DtwoDto4D
xyz2ijkxyz2ijk
xyzt2stxyzt2st
AnalyzeFMRI documentation built on May 14, 2018, 9:04 a.m.