Files in AnanseSeurat
Construct ANANSE GRN-Analysis Seurat
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/utils-pipe.R
R/Motif2TF_functions.R
R/import_functions.R
R/calculateDEGS_functions.R
R/export_functions.R
inst/scANANSE.Rmd
inst/scANANSE.yml
inst/doc/introduction.html
inst/doc/introduction.R
inst/doc/introduction.Rmd
inst/extdata/sce_small.Rds
inst/extdata/sce_obj_tiny.Rds
inst/extdata/influence/anansesnake_cluster3_average_diffnetwork.tsv
inst/extdata/influence/anansesnake_cluster3_average.tsv
inst/extdata/influence/anansesnake_cluster1_average.tsv
inst/extdata/influence/anansesnake_cluster2_average_diffnetwork.tsv
inst/extdata/influence/anansesnake_cluster2_average.tsv
inst/extdata/influence/anansesnake_cluster1_average_diffnetwork.tsv
inst/extdata/maelstrom/nonredundant.motifs.motif2factors.txt
inst/extdata/maelstrom/final.out.txt
inst/extdata/maelstrom/logos/GM_5_0_MotifA.png
inst/extdata/maelstrom/logos/GM_5_0_MotifD.png
build/vignette.rds
tests/testthat.R
tests/testthat/motif_intensities_scaled.tsv
tests/testthat/test-Motif2TF_functions.R
tests/testthat/maelstrom_table.tsv
tests/testthat/expression_means_scaled.tsv
tests/testthat/RNA_Counts.tsv
tests/testthat/Peaks_scaled.tsv
tests/testthat/test-export_functions.R
tests/testthat/nonredundant.motifs.motif2factors.txt
tests/testthat/influence_assay.tsv
tests/testthat/Peak_Counts.tsv
tests/testthat/influence_table.tsv
tests/testthat/sce_Maelstrom_obj.Rds
tests/testthat/sce_obj.Rds
tests/testthat/config.yaml
tests/testthat/test-import_functions.R
tests/testthat/sce_MotifTF_obj.Rds
tests/testthat/sce_inf_obj.Rds
tests/testthat/test-calculateDEGS_functions.R
tests/testthat/final.out.txt
tests/testthat/TPM.tsv
tests/testthat/samplefile.tsv
tests/testthat/deseq2/hg38-anansesnake_cluster3_average.diffexp.tsv
tests/testthat/deseq2/hg38-anansesnake_cluster2_average.diffexp.tsv
tests/testthat/deseq2/hg38-anansesnake_cluster1_cluster2.diffexp.tsv
tests/testthat/deseq2/hg38-anansesnake_cluster1_average.diffexp.tsv
tests/testthat/influence/anansesnake_cluster3_average_diffnetwork.tsv
tests/testthat/influence/anansesnake_cluster3_average.tsv
tests/testthat/influence/anansesnake_cluster1_average.tsv
tests/testthat/influence/anansesnake_cluster2_average_diffnetwork.tsv
tests/testthat/influence/anansesnake_cluster2_average.tsv
tests/testthat/influence/anansesnake_cluster1_average_diffnetwork.tsv
tests/testthat/logos/GM_5_0_MotifA.png
tests/testthat/logos/GM_5_0_MotifD.png
vignettes/introduction.Rmd
man/config_scANANSE.Rd
man/import_seurat_scANANSE.Rd
man/export_CPM_scANANSE.Rd
man/Maelstrom_Motif2TF.Rd
man/export_ATAC_maelstrom.Rd
man/per_cluster_df.Rd
man/pipe.Rd
man/DEGS_scANANSE.Rd
man/Factor_Motif_Plot.Rd
man/import_seurat_maelstrom.Rd
man/export_ATAC_scANANSE.Rd
man/figures/logo.png
man/figures/subplot_logo.png
