Files in AntibodyForests
Delineating Inter- And Intra-Antibody Repertoire Evolution
MD5
README.md
NAMESPACE
DESCRIPTION
R/AntibodyForests_data.R
R/calculate_GBLD.R
R/Af_cluster_node_features.R
R/VDJ_3d_properties.R
R/VDJ_import_IgBLAST_annotations.R
R/Af_compare_methods.R
R/Af_build.R
R/Af_edge_RMSD.R
R/VDJ_integrate_bulk.R
R/Af_to_newick.R
R/Af_compare_across_repertoires.R
R/Af_get_sequences.R
R/Af_PLM_dataframe.R
R/Af_distance_boxplot.R
R/Af_add_node_feature.R
R/VDJ_to_AIRR.R
R/Af_distance_scatterplot.R
R/igraph_to_phylo.R
R/Af_metrics.R
R/Af_plot_tree.R
R/Af_cluster_metrics.R
R/Af_sync_nodes.R
R/Af_plot_PLM.R
R/Af_compare_within_repertoires.R
inst/doc/AntibodyForests_vignette.html
inst/doc/AntibodyForests_vignette.R
inst/doc/AntibodyForests_vignette.Rmd
build/vignette.rds
vignettes/AntibodyForests_vignette.Rmd
vignettes/imgs/bulk_tree.png
vignettes/imgs/heatmap_4.png
vignettes/imgs/clusters_modalities2.png
vignettes/imgs/pca.png
vignettes/imgs/clusters_sackin.png
vignettes/imgs/distance_boxplot.png
vignettes/imgs/structure_Ab_distance.png
vignettes/imgs/clusters_asymmetry.png
vignettes/imgs/heatmap5.png
vignettes/imgs/clusters_modalities.png
vignettes/imgs/tree_ova_ml_S1CL8_internalnodes.png
vignettes/imgs/boxplot_betweenness.png
vignettes/imgs/PLM1.png
vignettes/imgs/boxplot_depth.png
vignettes/imgs/tree_ova_ml_S1CL8.png
vignettes/imgs/plm_scatterplot.png
vignettes/imgs/clusters_isotype.png
vignettes/imgs/main/logo.png
vignettes/imgs/QuickStart/quick-start_modalities.png
vignettes/imgs/QuickStart/quick-start_PCA.png
vignettes/imgs/QuickStart/quick-start_PCA2.png
vignettes/imgs/QuickStart/quick-start_tree.png
vignettes/objects/AntibodyForests_OVA_structure_AbAg.RData
vignettes/objects/VDJ_structure_AbAg.RData
vignettes/objects/metric_df.RData
vignettes/objects/VDJ_OVA_dummy_3.RData
vignettes/objects/PLM_dataframe.RData
vignettes/objects/VDJ_ova_structure.RData
data/af_mst.rda
data/small_af.rda
data/af_default.rda
data/PLM_dataframe.rda
data/compare_repertoire.rda
data/small_vdj.rda
data/af_nj.rda
man/VDJ_integrate_bulk.Rd
man/Af_distance_scatterplot.Rd
man/Af_compare_across_repertoires.Rd
man/Af_edge_RMSD.Rd
man/Af_cluster_metrics.Rd
man/PLM_dataframe.Rd
man/Af_PLM_dataframe.Rd
man/Af_to_newick.Rd
man/VDJ_to_AIRR.Rd
man/calculate_GBLD.Rd
man/Af_compare_methods.Rd
man/Af_compare_within_repertoires.Rd
man/Af_build.Rd
man/Af_cluster_node_features.Rd
man/compare_repertoire.Rd
man/VDJ_import_IgBLAST_annotations.Rd
man/Af_plot_tree.Rd
man/Af_get_sequences.Rd
man/Af_distance_boxplot.Rd
man/af_mst.Rd
man/VDJ_3d_properties.Rd
man/af_nj.Rd
man/Af_plot_PLM.Rd
man/igraph_to_phylo.Rd
man/Af_sync_nodes.Rd
man/af_default.Rd
man/Af_metrics.Rd
man/small_vdj.Rd
man/small_af.Rd
man/Af_add_node_feature.Rd
