Af_get_sequences: Function to get the sequences from the nodes in an...

In AntibodyForests: Delineating Inter- And Intra-Antibody Repertoire Evolution

Function to get the sequences from the nodes in an AntibodyForest object

Description

Function to get the sequences from the nodes in an AntibodyForest object

Usage

Af_get_sequences(AntibodyForests_object, sequence.name, min.nodes, min.edges)

Arguments

AntibodyForests_object	AntibodyForests-object, output from Af_build()
sequence.name	character, name of the sequence column in the AntibodyForests object (example VDJ_sequence_aa_trimmed)
min.nodes	integer, minimum number of nodes in the tree (not including germline)
min.edges	integer, minimum number of edges in the tree (not including edges to the germline)

Value

A dataframe with the sequences and sequence identifiers

Examples

sequence_df <- Af_get_sequences(AntibodyForests::small_af,
               sequence.name = "VDJ_sequence_aa_trimmed")

AntibodyForests documentation built on April 4, 2025, 4:45 a.m.