Af_to_newick: Saves an AntibodyForests-object into a newick file

In AntibodyForests: Delineating Inter- And Intra-Antibody Repertoire Evolution

Saves an AntibodyForests-object into a newick file

Description

Saves an AntibodyForests-object into a newick file. The node labels will have the format node\@size where size is the size of the node.

Usage

Af_to_newick(AntibodyForests_object, min.nodes, output.file)

Arguments

AntibodyForests_object	AntibodyForests-object, output from Af_build()
min.nodes	The minimum number of nodes in a tree to calculate metrics (including the germline).
output.file	string - specifies the path to the output file

Value

No value returned, saves the newick format to the output.file

Examples

Af_to_newick(AntibodyForests_object = AntibodyForests::small_af,
              min.nodes = 2,
              output.file = "output.newick")

AntibodyForests documentation built on April 4, 2025, 4:45 a.m.