Description Usage Arguments Value Examples
correct_bias()
(1) uses either of the three additive or either of the three multiplicative PMP (Partial Mean Polish) methods (the most appropriate spatial bias model can be either specified or determined by the program following the results of the Kolmogorov-Smirnov, Anderson-Darling or Cramer-von-Mises two-sample test) to correct the assay measurements if the plate-specific correction is specified; (2) carries out the assay-specific correction if specified.
1 | correct_bias(assay, method = NULL, alpha = 0.05, type = "PA")
|
assay |
The assay to be corrected. Has to be an |
method |
|
alpha |
Significance level threshold (defaults to 0.05) |
type |
|
The corrected assay (assay
object)
1 2 3 | assay<-create_assay(m)
detected<-detect_bias(assay)
corrected<-correct_bias(detected,method=2)
|
Loading required package: RColorBrewer
Loading required package: lattice
Loading required package: latticeExtra
Loading required package: kSamples
Loading required package: SuppDists
Loading required package: RVAideMemoire
*** Package RVAideMemoire v 0.9-73 ***
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