create_assay makes a new object of class assay. You should pass this object to
The assay you want to be corrected
An optional boolean array of the same dimensions as
assay The created assay object. It containts the following fields:
n The HTS matrix of raw measurements
ctrl The binary matrix of control wells
biasPositions The binary matrix where 1:well is biased, 0:well is unbiased, as suggested by Mann-Whitney test
mCorrected The HTS matrix of corrected measurements, initilized to a zero array, and subsequently storing the corrected version of
biasType Vector of length p, where p is the number of plates. It tells, for each plate of the assay, A:Additive trend, M:Multiplicative trend, U:Undetermined trend and C:Error-free plate.
biasModel Vector of length p, where p is the number of plates. It tells, for each plate of the assay, the most likely spatial bias model (1 through 6)
biasConf Vector of length p, where p is the number of plates. It tells, for each plate of the assay, the confidence in the model, (0 - lowest to 3- highest). It is computed by counting the number of bias models (additive or mutliplicative) which agree together.
1 2 3 4
Loading required package: RColorBrewer Loading required package: lattice Loading required package: latticeExtra Loading required package: kSamples Loading required package: SuppDists Loading required package: RVAideMemoire *** Package RVAideMemoire v 0.9-73 ***
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