Description Usage Arguments Value
A rather generic function to plot diagnostics for a single node (a one-dimensional node or a single slot from a multi-dimensional node). Intended for internal use only.
1 2 3 4 5 6 7 8 9 | plot.density.and.or.trace( coda,
plotDensity,
plotTrace,
d.prior,
nice.parameter.name,
zero.line=FALSE,
lower.bound=NA,
upper.bound=NA,
draw.prior=TRUE)
|
coda |
The code for the node. Rows are iterations. Columns are chains. |
plotDensity |
A logical value. If |
plotTrace |
A logical value. If |
d.prior |
A function that takes an array of values and returns the prior density evaluated at those values. |
nice.parameter.name |
A character value to use as labels in plots. |
zero.line |
A logical value. Should a verical zero line be drawn on the density plot? |
lower.bound |
Can be missing, used by |
upper.bound |
Can be missing, used by |
draw.prior |
Should the prior be drawn? |
Mainly called for the side effect of plotting. Also returns a vector of quantiles.
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