bammdata object and computes a phylogenetic
tree where branch lengths are equal to the mean of the marginal
distributions of rates on each branch. This tree can be plotted to
visualize rate variation across a phylogeny.
getMeanBranchLengthTree(ephy, rate = "speciation")
An object of class
The type of rate-tree to be computed. Options: "speciation" (default), "extinction", "ndr" (net diversification), and "trait".
A list with the following components:
phy A phylogenetic tree, topologically identical to the
model tree, but with branch lengths replaced by the mean
(marginal) rates on each branch as estimated from the
posterior samples in the
mean The mean rate over all branches.
median the median rate over all branches.
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