Description Details Author(s) References See Also Examples

Functions that estimate sample (taxonomic) composition from biomarker data

`bce1`

estimates probability distributions of a sample composition
based on an **input ratio matrix**, `A`

, containing
biomarker ratios in (field) samples, and an **input data matrix**,
`B`

, containing the biomarker ratios for several taxonomic groups

`tlsce`

estimates the total least squares solution

This version differs from the previous version <2 in that a different MCMC method is used that shows better convergence properties and has a more sound underlying statistical model.

Package: | BCE |

Type: | Package |

License: | GNU Public License 2 or above |

Karel Van den Meersche (Maintainer)

Karline Soetaert

Van den Meersche, K., K. Soetaert and J.J. Middelburg (2008) *A
Bayesian compositional estimator for microbial taxonomy
based on biomarkers*, Limnology and Oceanography Methods 6, 190-199

`bce`

the new function, with better convergence properties

`BCE`

the original function (versions < 2)

`tlsce`

total least squares compositional estimator

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BCE documentation built on May 30, 2017, 4:37 a.m.

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