summary.bce | R Documentation |
basic statistics of a bce object
## S3 method for class 'bce' summary(object, confInt = 2/3, ...)
object |
a bce-object, output of the function bce1() or BCE(). |
confInt |
confidence interval of values of composion matrix and ratio matrix. |
... |
additional arguments affecting the summary produced. |
if object is output of the function bce1():
a list containing:
meanA |
Average solution of the ratio matrix,found through MCMC. |
meanX |
Average solution of the composition matrix, found through MCMC. |
bestA |
Ratio matrix for which the posterior probability is maximal. |
bestX |
Composition matrix for which the posterior probability is maximal. |
sdA |
standard deviation of the ratio matrix. |
sdX |
standard deviation of the composition matrix. |
lastA |
Last value for the ratio matrix in the MCMC run. |
lastX |
Last value for the composition matrix in the MCMC run. |
medianA |
Median of the ratio matrix. |
medianX |
Median of the composition matrix. |
ubA |
Upper boundary of the confidence interval of the elements of the ratio matrix. |
ubX |
Upper boundary of the confidence interval of the elements of the composition matrix. |
lbA |
Lower boundary of the confidence interval of the elements of the ratio matrix. |
lbX |
Lower boundary of the confidence interval of the elements of the composition matrix. |
covar |
Covariance matrix of all elements of A and X. |
if object is output of the function BCE():
a list containing:
firstX |
X determined through least squares regression from the initial ratio matrix and the data matrix. |
bestRat |
Ratio matrix for which the posterior probability is maximal. |
bestX |
Composition matrix for which the posterior probability is maximal. |
bestp |
Maximal posterior probability. |
bestDat |
Product of |
meanRat |
Means of the elements of the ratio matrix. |
sdRat |
Standard deviation of the elements of the ratio matrix. |
lbRat |
Lower boundary of the confidence interval of the elements of the ratio matrix. |
ubRat |
Upper boundary of the confidence interval of the elements of the ratio matrix. |
covRat |
Covariance matrix of the elements of the ratio matrix. |
meanX |
Means of the elements of the composition matrix. |
sdX |
Standard deviation of the elements of the composition matrix. |
lbX |
Lower boundary of the confidence interval of the elements of the composition matrix. |
ubX |
Upper boundary of the confidence interval of the elements of the composition matrix. |
covX |
Covariance matrix of the elements of the composition matrix. |
Karel Van den Meersche
bce1
, BCE
, plot.bce
,
export.bce
, pairs.bce
# bceOutput is an example output based on bceInput summary(bceOutput)
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