Nothing
## ---- include = FALSE---------------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.width=8,
fig.height=6,
fig.align = "center"
)
## ----setup--------------------------------------------------------------------
library(BGPhazard)
library(dplyr)
library(ggplot2)
## -----------------------------------------------------------------------------
KIDNEY
## -----------------------------------------------------------------------------
bsb_init <- BSBInit(
KIDNEY,
alpha = 0.001,
beta = 0.001,
c = 1000,
part_len = 10,
seed = 42
)
summary(bsb_init)
## -----------------------------------------------------------------------------
samples <- BSBHaz(
bsb_init,
iter = 100,
burn_in = 10,
gamma_d = 0.6,
theta_d = 0.3,
seed = 42
)
print(samples)
## -----------------------------------------------------------------------------
BSBSumm(samples, "omega1")
BSBSumm(samples, "lambda1")
## -----------------------------------------------------------------------------
BSBPlotSumm(samples, "lambda1")
BSBPlotSumm(samples, "lambda2")
## -----------------------------------------------------------------------------
BSBPlotSumm(samples, "s1")
BSBPlotSumm(samples, "s2")
## -----------------------------------------------------------------------------
BSBPlotDiag(samples, "omega1", type = "traceplot")
BSBPlotDiag(samples, "omega1", type = "ergodic_means")
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