ptrace: Trace (ACF) Plots

In BHTSpack: Bayesian Multi-Plate High-Throughput Screening of Compounds

Description

This function outputs trace plots of certain latent variables.

Usage

ptrace(res, var, ndisc, nr, nc, type="trace")

Arguments

res	An output object from bhts().
var	Variable for which to display convergence diagnostic plots. Current options are mu0 (displaying μ_{01},…,μ_{0K}), mu1 (displaying μ_{11},…,μ_{1K}), sigma0 (displaying σ_{01}^2,…,σ_{0K}^2), sigma1 (displaying σ_{11}^2,…,σ_{1K}^2), pk0 (displaying λ_{1}^{(0)},…,λ_{K}^{(0)}) and pk1 (displaying λ_{1}^{(1)},…,λ_{K}^{(1)}).
ndisc	Number of iterations for which to discard samples.
nr	Number of rows in the resulting composite plot.
nc	Number of columns in the resulting composite plot.
type	Type of convergence diagnostic. Currently implemented are trace plots (default type="trace") and ACF plots (type="acf")

Examples

 #See package vignette

BHTSpack documentation built on Feb. 8, 2021, 5:07 p.m.