Man pages for BIRDS
Biodiversity Information Review and Decision Support
| BIRDS | BIRDS: Biodiversity Information Review and Decision Support. |
| bombusObs | Species observations for the genus _Bombus_ spp. in Götaland,... |
| bombusObsShort | A short version of bombusObs dataset for faster examples. |
| bryophytaObs | Species observations of bryophytes in Götaland, Sweden |
| communityMatrix | Create a community matrix (grid cells x species) |
| communityMatrixGrid | Creates a community matrix per grid cell (sample x species x... |
| countIfHigher | A function to count pixels with data |
| countsYearMonth | Internal function for getSpatiotemporal() |
| createOverlayForGrid | Create spillover overlay for specific grid |
| createVisits | Create unique visits IDs |
| deconstructOverlay | Deconstruction of the overlay |
| drawPolygon | Create the polygon for the study area by drawing into a world... |
| exploreVisits | A function to explore the definition of field visits |
| exportBirds | Export single variables from SummarisedBirds objects |
| exposeIgnorance | Create ignorance scores |
| extractPresence | Extract presence from SB |
| findCols | Find a text among column names |
| focalSpReport | Summarise all records for a species |
| focalSpSummary | Summarize records of a species among all visits |
| getGridIDs | Create unique IDs based on a grid |
| getSpatial | Collect spatial data |
| getSpatioTemporal | Collect spatio-temporal data |
| getTemporal | Collect temporal data |
| getUTMproj | A wrapper around getUTMzone and produce a crs object string |
| getUTMzone | internal function. Depends on the polygon object utmZones |
| gotaland | Götaland, Sweden. |
| gridAsString | Convert a grid into a web query string. |
| includeSpillover | Include spillover observations |
| includeUniqueSpillover | Include unique spillover observations |
| listSpecies | Lists all species names from the data set |
| logObsInd | The actual observation index function |
| makeCircle | Create the minimum circle containing the points |
| makeGrid | Make a grid |
| normalize | Normalize |
| OB2Polygon | Create the polygon for the study area from a data set of... |
| obsData | Extract observation data |
| obsIndex | Observation Index |
| obsIndexSpatial | Relative observation index (Spatial) |
| obsIndexTemporal | Relative observation index (Temporal) |
| organizeBirds | Organize a data.frame to a usable format |
| organizeDate | Organize the date-column(s) |
| overlayBirds | Overlay BIRDS object and grid |
| recBySpp | Observations by species or records-by-species matrix |
| removeInexDays | A funciton to remove inexistent combination of days like... |
| removeObs | Remove observations belonging to the shortest ("worst")... |
| renameGrid | Rename the cells in a grid |
| SB | A simple summarisedBirds object. |
| searchPolygon | Searching polygon covering Götaland, Sweden. |
| simpleSB | A simple empty summarisedBirds object. |
| simplifySpp | Simplify species names |
| spatialVisits | A function to convert visits into a spatial object |
| speciesSummary | Summarize all records for a species |
| summarizeBirds | Summarize the OrganizedBirds |
| visits | Get/set the visits |
| whichNonEmpty | Which cells are not empty |
