BOG: Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions

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An implementation of three statistical tests for identification of COG (Cluster of Orthologous Groups) that are over represented among genes that show differential expression under conditions. It also provides tabular and graphical summaries of the results for easy visualisation and presentation.

Author
Jincheol Park (Keimyung University, South Korea), Cenny Taslim, Shili Lin (The Ohio State University, USA)
Date of publication
2015-03-03 14:32:46
Maintainer
Jincheol Park <park.jincheol@gmail.com>
License
GPL-3
Version
2.0

View on CRAN

Man pages

anthracis
Bacillus anthracis str. 'Ames Ancestor'
anthracis_iron
anthracis_iron
BOG
BOG
BOGest
BOGest
BOG-package
BOG is a package for identifying differentially regulated...
BOGstat
BOGstat
brucella
Brucella suis 1330
coxiella
Coxiella burnetii RSA 493
difficile
Clostridium difficile 630
DIMEplot
DIMEplot
ecoli
Escherichia coli O157:H7 str. Sakai
francisella
Francisella tularensis subsp. holarctica LVS
gseaplot
gseaplot
hgplot
hgplot
internalhgplot
internalhgplot
printGSEA
printGSEA
printHG
printHG
printRANK
printRANK

Files in this package

BOG
BOG/NAMESPACE
BOG/data
BOG/data/ecoli.rda
BOG/data/difficile.rda
BOG/data/anthracis_iron.rda
BOG/data/brucella.rda
BOG/data/coxiella.rda
BOG/data/francisella.rda
BOG/data/anthracis.rda
BOG/R
BOG/R/hgplot.R
BOG/R/BOGstat.R
BOG/R/printGSEA.R
BOG/R/printHG.R
BOG/R/printRANK.R
BOG/R/BOGest.R
BOG/R/BOG.R
BOG/R/DIMEplot.R
BOG/R/internalhgplot.R
BOG/R/gseaplot.R
BOG/MD5
BOG/DESCRIPTION
BOG/man
BOG/man/ecoli.Rd
BOG/man/BOG.Rd
BOG/man/printGSEA.Rd
BOG/man/printRANK.Rd
BOG/man/anthracis_iron.Rd
BOG/man/DIMEplot.Rd
BOG/man/internalhgplot.Rd
BOG/man/difficile.Rd
BOG/man/BOGest.Rd
BOG/man/brucella.Rd
BOG/man/anthracis.Rd
BOG/man/printHG.Rd
BOG/man/BOG-package.Rd
BOG/man/francisella.Rd
BOG/man/BOGstat.Rd
BOG/man/gseaplot.Rd
BOG/man/hgplot.Rd
BOG/man/coxiella.Rd