BOGstat: BOGstat

Description Usage Arguments

View source: R/BOGstat.R

Description

This is an internal function so that it is not expected for a user to use it.

Usage

1
BOGstat(db_Gene, hg.thresh, gsea)

Arguments

db_Gene

Internally defined list object.

hg.thresh

In statistical analysis, BOG uses local-fdr as a score for strength of evidence for differences between groups. The smaller absolute value of local fdr, the stronger is the evidence for differences in gene expression. fdr.cutoff is a threshhold used in hypergeometric test. By default, it is set 0.05.

gsea

By default, gsea is set FALSE so that unless user specify it to be TRUE, BOG does not perform GSEA test.


BOG documentation built on May 29, 2017, 8:35 p.m.