BOGstat: BOGstat
In BOG: Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions
Description
This is an internal function so that it is not expected for a user to use it.
Usage
1
BOGstat(db_Gene, hg.thresh, gsea)
Arguments
db_Gene
Internally defined list object.
hg.thresh
In statistical analysis, BOG uses local-fdr as a score for strength of evidence for differences between groups. The smaller absolute value of local fdr, the stronger is the evidence for differences in gene expression. fdr.cutoff is a threshhold used in hypergeometric test. By default, it is set 0.05.
gsea
By default, gsea is set FALSE so that unless user specify it to be TRUE, BOG does not perform GSEA test.
BOG documentation built on May 2, 2019, 6:50 a.m.
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Description
This is an internal function so that it is not expected for a user to use it.
Usage
1 | BOGstat(db_Gene, hg.thresh, gsea)
|
Arguments
db_Gene |
Internally defined list object. |
hg.thresh |
In statistical analysis, BOG uses local-fdr as a score for strength of evidence for differences between groups. The smaller absolute value of local fdr, the stronger is the evidence for differences in gene expression. fdr.cutoff is a threshhold used in hypergeometric test. By default, it is set 0.05. |
gsea |
By default, gsea is set FALSE so that unless user specify it to be TRUE, BOG does not perform GSEA test. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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