gseaplot: gseaplot

Description Usage Arguments References

View source: R/gseaplot.R


This is the command to visualize the path of GSEA scores. The GSEA takes all genes into account by constructing a test statistic based on their local-fdr without pre-selection of threshold.





This is a bog object.


To plot an enrichment score behavior, a user needs to specify a cat argument from one of COG groups. The default of cat is set NULL to raise BOG specific warning instead of R-system warning when a user fogets to specify COG, which should match one of the COGs specified in the input file or in the built-in files. The warning message is ""BOG : Category needs to be specified.""


Subramian, A. et al.(2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. PNAS vol.102 no.43, 15545-15550.

BOG documentation built on May 29, 2017, 8:35 p.m.