gseaplot: gseaplot

In BOG: Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions

Description

This is the command to visualize the path of GSEA scores. The GSEA takes all genes into account by constructing a test statistic based on their local-fdr without pre-selection of threshold.

Usage

gseaplot(x, cat = NULL)

Arguments

x	This is a bog object.
cat	To plot an enrichment score behavior, a user needs to specify a cat argument from one of COG groups. The default of cat is set NULL to raise BOG specific warning instead of R-system warning when a user fogets to specify COG, which should match one of the COGs specified in the input file or in the built-in files. The warning message is ""BOG : Category needs to be specified.""

References

Subramian, A. et al.(2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. PNAS vol.102 no.43, 15545-15550.

BOG documentation built on May 2, 2019, 6:50 a.m.