Man pages for BaMORC
Bayesian Model Optimized Reference Correction Method for Assigned and Unassigned Protein NMR Spectra
| AA57OLMatrix | Overlapping Matrix for 57 amino acid and secondary structure... |
| AA57OLWeights | Overlapping weights for 57 amino acid and secondary structure... |
| aaCodes1Letter19 | Single-letter amino acid naming convention. |
| aaCodes1Letter20 | Single-letter amino acid naming convention. |
| aaCodes3Letter1stCap | Three-letter amino acid naming convention with first letter... |
| aaCodes3LetterAllCap.v | Three-letter amino acid naming convention with all letters... |
| aaFreq | Pre-defined amino acid frequency data. |
| AvgCov.t | Average covariance across three secondary structures for all... |
| bamorc | Calculates the referencing correction value. |
| calculate_aa_prob | Calculates an amino acid typing probability. |
| calculate_chi_squared_stat | Calculates a chi squared statistic(s). |
| calculate_mse | Calculates mean squared error |
| calculate_rcf | Calculates the relative cumulative frequency for amino acid... |
| CAMuTable | Mean chemical shift values for alpha carbon . |
| CarbonCov.t | Covariance values of chemical shifts of alpha and beta... |
| CASdTable | Standard deviation of chemical shift values for alpha carbon... |
| CBMuTable | Mean chemical shift values for beta carbon . |
| CBSdTable | Standard deviation of chemical shift values for beta carbon . |
| chemicalShifts | Pre-defined sample chemical shifts data. |
| cname | All the amino acids and secondary structures combinations for... |
| ID | RefDB ID included in the BaMORC package. |
| inverseMatrices | inverseMatrices. |
| jpred_fetcher | Using JPred Mass-submission scheduler program to submit... |
| read_db_file | 'read_db_file()' reads in data from existing database that... |
| read_nmrstar_file | Extracts data from BMRB STAR 3.0 file. 'read_nmrstar_file()'... |
| read_raw_file | Extracts data from a protein NMR experimental peak list.... |
| RefDB_data | RefDB object |
| RefDB.StatCA | Statistics of chemical shifts values of alpha carbons from... |
| RefDB.StatCB | Statistics of chemical shifts values of beta carbons from... |
| unassigned_bamorc | Calculates the referencing correction value for unassigned... |
