BaSTA: Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data

Estimates survival and mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots.

Author
Fernando Colchero, Owen Jones, Maren Rebke
Date of publication
2015-11-08 09:30:18
Maintainer
Fernando Colchero <colchero@imada.sdu.dk>
License
GPL
Version
1.9.4

View on CRAN

Man pages

basta
Parametric Bayesian estimation of age-specific survival for...
BaSTA-package
BaSTA: a package for parametric Bayesian estimation of...
CensusToCaptHist
Constructs capture-history matrix from census matrix to be...
DataCheck
A function to check the input data file for a Bayesian...
MakeCovMat
Function to build a matrix of covariates (i.e. design matrix)...
MakeLifeTable
A function for calculating standard cohort-based life tables...
multibasta
Function to run multiple BaSTA models on the same dataset.
sim1
Simulated dataset to demonstrate Bayesian Survival Trajectory...
sim1Out
Output from a Bayesian Survival Trajectory Analysis (BaSTA)...
summary.basta
Summarizing and plotting Bayesian Survival Trajectory...

Files in this package

BaSTA
BaSTA/inst
BaSTA/inst/CITATION
BaSTA/inst/doc
BaSTA/inst/doc/BaSTAoverview.pdf
BaSTA/NAMESPACE
BaSTA/data
BaSTA/data/sim1Out.RData
BaSTA/data/sim1.RData
BaSTA/R
BaSTA/R/plot.basta.R
BaSTA/R/summary.basta.R
BaSTA/R/basta.default.R
BaSTA/R/DataCheck.R
BaSTA/R/basta.R
BaSTA/R/CensusToCaptHist.R
BaSTA/R/MakeCovMat.R
BaSTA/R/MakeLifeTable.R
BaSTA/R/multibasta.R
BaSTA/R/print.basta.R
BaSTA/MD5
BaSTA/DESCRIPTION
BaSTA/man
BaSTA/man/summary.basta.Rd
BaSTA/man/MakeCovMat.Rd
BaSTA/man/BaSTA-package.Rd
BaSTA/man/basta.Rd
BaSTA/man/sim1Out.Rd
BaSTA/man/CensusToCaptHist.Rd
BaSTA/man/multibasta.Rd
BaSTA/man/sim1.Rd
BaSTA/man/MakeLifeTable.Rd
BaSTA/man/DataCheck.Rd