API for BigDataStatMeth
Title: Scalable Statistical Computing with HDF5-Backed Matrices
| Global functions | |
|---|---|
| %*% | Man page |
| .agg_apply_colnames | Source code |
| .agg_apply_rownames | Source code |
| .agg_options | Source code |
| .agg_save_result | Source code |
| .get_option | Man page Source code |
| .hdf5matrix_options | Man page |
| .onUnload | Man page Source code |
| BigDataStatMeth | Man page |
| HDF5Matrix-S3 | Man page |
| HDF5Matrix-scalar-aggregations | Man page |
| Ops.HDF5Matrix | Man page Source code Source code |
| Summary.HDF5Matrix | Man page Source code |
| [.HDF5Matrix | Man page |
| [<-.HDF5Matrix | Man page |
| `%*%.HDF5Matrix` | Source code |
| `%*%.default` | Source code |
| `%*%` | Source code |
| `[.HDF5Matrix` | Source code |
| `[<-.HDF5Matrix` | Source code |
| `colnames<-.HDF5Matrix` | Source code |
| `diag<-.HDF5Matrix` | Source code |
| `diag<-.default` | Source code |
| `diag<-` | Source code |
| `dimnames<-.HDF5Matrix` | Source code |
| `rownames<-.HDF5Matrix` | Source code |
| apply_function | Man page Source code |
| apply_function.HDF5Matrix | Source code |
| as.data.frame.HDF5Matrix | Man page Source code |
| as.matrix.HDF5Matrix | Man page Source code |
| bdCorr_matrix | Man page Source code |
| bdCreate_hdf5_group | Man page Source code |
| bdCreate_hdf5_matrix | Man page Source code |
| bdCrossprod | Man page Source code |
| bdImportData_hdf5 | Man page Source code |
| bdImportTextFile_hdf5 | Man page Source code |
| bdReduce_hdf5_dataset | Man page Source code |
| bdScalarwproduct | Man page Source code |
| bdWrite_hdf5_dimnames | Man page Source code |
| bd_wproduct | Man page Source code |
| bdapply_Function_hdf5 | Man page Source code |
| bdblockMult | Man page Source code |
| bdblockSubstract | Man page Source code |
| bdblockSum | Man page Source code |
| bdgetDatasetsList_hdf5 | Man page Source code |
| bdmove_hdf5_dataset | Man page Source code |
| bdpseudoinv | Man page Source code |
| bdpseudoinv_hdf5 | Man page Source code |
| bdtCrossprod | Man page Source code |
| can_allocate | Man page Source code |
| cancer | Man page |
| cbind.HDF5Matrix | Man page Source code |
| chol.HDF5Matrix | Man page Source code |
| close.HDF5Matrix | Man page Source code |
| colMaxs | Man page Source code |
| colMaxs.HDF5Matrix | Man page Source code |
| colMeans | Man page Source code |
| colMeans.HDF5Matrix | Man page Source code |
| colMeans.default | Source code |
| colMins | Man page Source code |
| colMins.HDF5Matrix | Man page Source code |
| colSds | Man page Source code |
| colSds.HDF5Matrix | Man page Source code |
| colSums | Man page Source code |
| colSums.HDF5Matrix | Man page Source code |
| colSums.default | Source code |
| colVars | Man page Source code |
| colVars.HDF5Matrix | Man page Source code |
| colesterol | Man page |
| colnames.HDF5Matrix | Man page Source code |
| colnames<-.HDF5Matrix | Man page |
| cor | Man page Source code |
| cor.HDF5Matrix | Man page Source code |
| cor.default | Source code |
| crossprod | Man page Source code |
| crossprod.HDF5Matrix | Man page Source code |
| crossprod.default | Source code |
| diag | Man page Source code |
| diag.HDF5Matrix | Man page Source code |
| diag.default | Man page Source code |
| diag<- | Man page |
| diag_op | Man page Source code |
| diag_op.HDF5Matrix | Man page Source code |
| diag_scale | Man page Source code |
| diag_scale.HDF5Matrix | Man page Source code |
| dim.HDF5Matrix | Man page Source code |
| dimnames.HDF5Matrix | Man page Source code |
| dimnames<-.HDF5Matrix | Man page |
| eigen | Man page Source code |
| eigen.HDF5Matrix | Man page Source code |
| eigen.default | Man page Source code |
| filter_low_coverage | Man page Source code |
| filter_low_coverage.HDF5Matrix | Man page Source code |
| filter_maf | Man page Source code |
| filter_maf.HDF5Matrix | Man page Source code |
| get_available_ram | Man page Source code |
| get_cpu_cores | Man page Source code |
| get_memory_thresholds | Man page Source code |
| get_recommended_threads | Man page Source code |
| get_total_ram | Man page Source code |
| hdf5_apply | Man page Source code |
| hdf5_close_all | Man page Source code |
| hdf5_close_file | Man page Source code |
| hdf5_create_matrix | Man page Source code |
| hdf5_import | Man page Source code |
| hdf5_import_multiple | Man page Source code |
| hdf5_matrix | Man page Source code |
| hdf5_reduce | Man page Source code |
| hdf5matrix_options | Man page Source code |
| impute_snps | Man page Source code |
| impute_snps.HDF5Matrix | Man page Source code |
| is_open | Man page Source code |
| is_open.HDF5Matrix | Source code |
| length.HDF5Matrix | Man page Source code |
| list_datasets | Man page Source code |
| mean.HDF5Matrix | Man page Source code |
| memory_info | Man page Source code |
| miRNA | Man page |
| multiply_sparse | Man page Source code |
| multiply_sparse.HDF5Matrix | Man page Source code |
| object_size | Man page Source code |
| object_size.HDF5Matrix | Source code |
| prcomp.HDF5Matrix | Man page Source code |
| print.HDF5Matrix | Man page Source code |
| print.HDF5PCA | Man page Source code |
| pseudoinverse | Man page Source code |
| pseudoinverse.HDF5Matrix | Man page Source code |
| pseudoinverse.default | Man page Source code |
| qr | Man page Source code |
| qr.HDF5Matrix | Man page Source code |
| qr.default | Source code |
| rbind.HDF5Matrix | Man page Source code |
| rcpp_hdf5_close_all_file_handles | Man page Source code |
| rcpp_hdf5_close_all_registry | Man page Source code |
| rcpp_hdf5_close_at_paths | Man page Source code |
| rcpp_hdf5_close_file_handles | Man page Source code |
| rcpp_hdf5_close_file_handles_safe | Man page Source code |
| rcpp_hdf5_create_matrix | Man page Source code |
| rcpp_hdf5dataset_add | Man page Source code |
| rcpp_hdf5dataset_apply_function | Source code |
| rcpp_hdf5dataset_bind | Source code |
| rcpp_hdf5dataset_chol | Source code |
| rcpp_hdf5dataset_close | Man page Source code |
| rcpp_hdf5dataset_colMaxs | Man page Source code |
| rcpp_hdf5dataset_colMeans | Man page Source code |
| rcpp_hdf5dataset_colMins | Man page Source code |
| rcpp_hdf5dataset_colSds | Man page Source code |
| rcpp_hdf5dataset_colSums | Man page Source code |
| rcpp_hdf5dataset_colVars | Man page Source code |
| rcpp_hdf5dataset_cor | Source code |
| rcpp_hdf5dataset_crossprod | Man page Source code |
| rcpp_hdf5dataset_diag_get | Source code |
| rcpp_hdf5dataset_diag_op | Source code |
| rcpp_hdf5dataset_diag_scale | Source code |
| rcpp_hdf5dataset_diag_set | Source code |
| rcpp_hdf5dataset_dim | Man page Source code |
| rcpp_hdf5dataset_div_ew | Man page Source code |
| rcpp_hdf5dataset_eigen | Source code |
| rcpp_hdf5dataset_filter_low_coverage | Source code |
| rcpp_hdf5dataset_filter_maf | Source code |
| rcpp_hdf5dataset_impute_snps | Source code |
| rcpp_hdf5dataset_info | Man page Source code |
| rcpp_hdf5dataset_is_valid | Man page Source code |
| rcpp_hdf5dataset_mul_ew | Man page Source code |
| rcpp_hdf5dataset_multiply | Man page Source code |
| rcpp_hdf5dataset_multiply_sparse | Source code |
| rcpp_hdf5dataset_normalize | Source code |
| rcpp_hdf5dataset_open | Man page Source code |
| rcpp_hdf5dataset_pca | Source code |
| rcpp_hdf5dataset_pseudoinv | Source code |
| rcpp_hdf5dataset_qr | Source code |
| rcpp_hdf5dataset_read_all | Man page Source code |
| rcpp_hdf5dataset_read_dimnames | Man page Source code |
| rcpp_hdf5dataset_reduce | Source code |
| rcpp_hdf5dataset_rowMaxs | Man page Source code |
| rcpp_hdf5dataset_rowMeans | Man page Source code |
| rcpp_hdf5dataset_rowMins | Man page Source code |
| rcpp_hdf5dataset_rowSds | Man page Source code |
| rcpp_hdf5dataset_rowSums | Man page Source code |
| rcpp_hdf5dataset_rowVars | Man page Source code |
| rcpp_hdf5dataset_scalar_max | Man page Source code |
| rcpp_hdf5dataset_scalar_mean | Man page Source code |
| rcpp_hdf5dataset_scalar_min | Man page Source code |
| rcpp_hdf5dataset_scalar_sd | Man page Source code |
| rcpp_hdf5dataset_scalar_sum | Man page Source code |
| rcpp_hdf5dataset_scalar_var | Man page Source code |
| rcpp_hdf5dataset_solve | Source code |
| rcpp_hdf5dataset_split | Source code |
| rcpp_hdf5dataset_subset | Man page Source code |
| rcpp_hdf5dataset_subtract | Man page Source code |
| rcpp_hdf5dataset_svd | Source code |
| rcpp_hdf5dataset_sweep | Source code |
| rcpp_hdf5dataset_tcrossprod | Man page Source code |
| rcpp_hdf5dataset_write_all | Man page Source code |
| rcpp_hdf5dataset_write_block | Man page Source code |
| rcpp_hdf5dataset_write_dimnames | Man page Source code |
| reduce | Man page Source code |
| reduce.HDF5Matrix | Source code |
| rowMaxs | Man page Source code |
| rowMaxs.HDF5Matrix | Man page Source code |
| rowMeans | Man page Source code |
| rowMeans.HDF5Matrix | Man page Source code |
| rowMeans.default | Source code |
| rowMins | Man page Source code |
| rowMins.HDF5Matrix | Man page Source code |
| rowSds | Man page Source code |
| rowSds.HDF5Matrix | Man page Source code |
| rowSums | Man page Source code |
| rowSums.HDF5Matrix | Man page Source code |
| rowSums.default | Source code |
| rowVars | Man page Source code |
| rowVars.HDF5Matrix | Man page Source code |
| rownames.HDF5Matrix | Man page Source code |
| rownames<-.HDF5Matrix | Man page |
| scale | Man page Source code |
| scale.HDF5Matrix | Man page Source code |
| scale.default | Source code |
| sd | Man page Source code |
| sd.HDF5Matrix | Man page Source code |
| sd.default | Source code |
| show_hdf5matrix_options | Man page Source code |
| solve.HDF5Matrix | Man page Source code |
| split.HDF5Matrix | Man page Source code |
| split_dataset | Man page Source code |
| split_dataset.HDF5Matrix | Man page Source code |
| str.HDF5Matrix | Man page Source code |
| svd | Man page Source code |
| svd.HDF5Matrix | Man page Source code |
| svd.default | Source code |
| sweep | Man page Source code |
| sweep.HDF5Matrix | Man page Source code |
| sweep.default | Source code |
| system_info | Man page Source code |
| tcrossprod | Man page Source code |
| tcrossprod.HDF5Matrix | Man page Source code |
| tcrossprod.default | Source code |
| var | Man page Source code |
| var.HDF5Matrix | Man page Source code |
| var.default | Source code |
