Files in BigDataStatMeth
Title: Scalable Statistical Computing with HDF5-Backed Matrices

configure
MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
LICENSE
cleanup
R/RcppExports.R R/HDF5Matrix_op_matvec.R R/S3_bind.R R/S3_arithmetic.R R/options.R R/S3_dimnames.R R/S3_matvec.R R/HDF5Matrix_op_split.R R/HDF5Matrix_create.R R/S3_aggregations.R R/HDF5Matrix_op_decompositions.R R/ImportData_hdf5.R R/HDF5Matrix_op_correlation.R R/HDF5Matrix_op_arithmetic.R R/HDF5Matrix_import.R R/S3_subset_assignment.R R/S3_subset.R R/S3_standalone.R R/S3_omics.R R/S3_conversion.R R/S3_factorizations.R R/S3_eigen.R R/data.R R/S3_operations.R R/HDF5Matrix_class.R R/S3_pseudoinverse.R R/hdf5CloseAll.R R/S3_diagonal.R R/S3_core.R R/HDF5Matrix_op_factorizations.R R/HDF5Matrix_constructor.R R/S3_utils.R R/S3_decompositions.R R/HDF5Matrix_op_normalize.R R/HDF5Matrix_op_pseudoinv.R R/HDF5Matrix_op_aggregations.R R/S3_sparse.R R/HDF5Matrix_op_sparse.R R/HDF5Matrix_op_reduce_apply.R R/S3_eigen_pseudoinv.R R/HDF5Matrix_op_eigen.R R/zzz.R R/HDF5Matrix_op_bind.R R/S3_normalize.R R/HDF5Matrix_multiply.R R/BigDataStatMeth.R R/HDF5Matrix_op_omics.R R/S3_algebra.R R/memory_utils.R R/S3_split.R R/HDF5Matrix_io.R R/HDF5Matrix_core.R R/S3_correlation.R
src/Makevars.win
src/mem_blockmult.cpp
src/hdf5_pseudoinverse.cpp
src/mem_scalarprod.cpp
src/hdf5_r6_omics.cpp
src/RcppExports.cpp
src/hdf5_reduceDataset.cpp
src/hdf5_r6_bind.cpp
src/hdf5_r6_arithmetic.cpp
src/hdf5_r6_split.cpp
src/hdf5_r6_pseudoinv.cpp
src/hdf5_createMatrix.cpp
src/hdf5_r6_matvec.cpp
src/hdf5_r6_write.cpp
src/mem_weightprod.cpp
src/hdf5_r6_cholesky.cpp
src/hdf5_r6_reduce_apply.cpp
src/hdf5_moveDataset.cpp
src/mem_blocksum.cpp
src/hdf5_r6_pca.cpp
src/hdf5_r6_correlation.cpp
src/hdf5_r6_minimal.cpp
src/hdf5_writeDimnames.cpp
src/mem_correlation.cpp
src/hdf5_r6_multiply.cpp
src/Makevars.in
src/mem_blocksubstract.cpp
src/hdf5_systemInfo.cpp
src/hdf5_createGroup.cpp
src/hdf5_r6_normalize.cpp
src/mem_crossprod.cpp
src/hdf5_getDatasetList.cpp
src/hdf5_r6_qr.cpp
src/hdf5_r6_sparse.cpp
src/hdf5_applyFunction.cpp
src/hdf5_r6_svd.cpp
src/hdf5_r6_aggregations.cpp
src/mem_tcrossprod.cpp
src/hdf5_importFile.cpp
src/hdf5_r6_subset.cpp
src/hdf5_r6_eigen.cpp
inst/cc
inst/WORDLIST
inst/include/BigDataStatMeth.hpp
inst/include/memAlgebra/memSubstract.hpp
inst/include/memAlgebra/memOptimizedProducts.hpp
inst/include/memAlgebra/memSum.hpp
inst/include/memAlgebra/memMultiplication.hpp
inst/include/memAlgebra/memOtherFunctions.hpp
inst/include/hdf5Algebra/vectorOperations.hpp
inst/include/hdf5Algebra/matrixDiagonal.hpp
inst/include/hdf5Algebra/matrixInvCholesky.hpp
inst/include/hdf5Algebra/tcrossprod.hpp
inst/include/hdf5Algebra/matrixAggregations.hpp
inst/include/hdf5Algebra/matrixDiagonal_OLD.hpp
inst/include/hdf5Algebra/matrixSdMean.hpp
inst/include/hdf5Algebra/matrixSvd.hpp
inst/include/hdf5Algebra/crossprod.hpp
inst/include/hdf5Algebra/multiplication.hpp
inst/include/hdf5Algebra/matrixSubstract.hpp
inst/include/hdf5Algebra/matrixTriangular.hpp
inst/include/hdf5Algebra/matrixSum.hpp
inst/include/hdf5Algebra/matrixEquationSolver.hpp
inst/include/hdf5Algebra/matrixPCA.hpp
inst/include/hdf5Algebra/matrixSvdBlock.hpp
inst/include/hdf5Algebra/matrixEigenDecomposition.hpp
inst/include/hdf5Algebra/matrixPseudoinverse.hpp
inst/include/hdf5Algebra/matrixNormalization.hpp
inst/include/hdf5Algebra/multiplicationSparse.hpp
inst/include/hdf5Algebra/vectormatrix.hpp
inst/include/hdf5Algebra/matrixQR.hpp
inst/include/hdf5Algebra/matrixCorrelation.hpp
inst/include/hdf5Utilities/hdf5ApplytoDatasets.hpp
inst/include/hdf5Utilities/hdf5RemoveElements.hpp
inst/include/hdf5Utilities/hdf5Diagonal.hpp
inst/include/hdf5Utilities/hdf5DatasetsInternal.hpp
inst/include/hdf5Utilities/hdf5ImportFiles.hpp
inst/include/hdf5Utilities/hdf5ReduceDataset.hpp
inst/include/hdf5Utilities/hdf5Files.hpp
inst/include/hdf5Utilities/hdf5DiagonalMethods.hpp
inst/include/hdf5Utilities/hdf5SortDataset.hpp
inst/include/hdf5Utilities/hdf5BindDatasets.hpp
inst/include/hdf5Utilities/hdf5ImputeData.hpp
inst/include/hdf5Utilities/hdf5Methods.hpp
inst/include/hdf5Utilities/hdf5Datasets.hpp
inst/include/hdf5Utilities/hdf5Groups.hpp
inst/include/hdf5Utilities/hdf5RemoveLowData.hpp
inst/include/hdf5Utilities/hdf5CheckClose.hpp
inst/include/hdf5Utilities/hdf5Files.hpp.bck
inst/include/hdf5Utilities/hdf5SplitDataset.hpp
inst/include/hdf5Utilities/hdf5Dims.hpp
inst/include/hdf5Utilities/hdf5Utilities.hpp
inst/include/hdf5Omics/hdf5RemoveMAF.hpp
inst/include/hdf5Omics/hdf5OmicsUtils.hpp
inst/include/Spectra/SymGEigsSolver.h
inst/include/Spectra/GenEigsRealShiftSolver.h
inst/include/Spectra/DavidsonSymEigsSolver.h
inst/include/Spectra/JDSymEigsBase.h
inst/include/Spectra/GenEigsComplexShiftSolver.h
inst/include/Spectra/SymEigsBase.h
inst/include/Spectra/GenEigsSolver.h
inst/include/Spectra/GenEigsBase.h
inst/include/Spectra/SymGEigsShiftSolver.h
inst/include/Spectra/SymEigsSolver.h
inst/include/Spectra/SymEigsShiftSolver.h
inst/include/Spectra/LinAlg/UpperHessenbergSchur.h
inst/include/Spectra/LinAlg/BKLDLT.h
inst/include/Spectra/LinAlg/DoubleShiftQR.h
inst/include/Spectra/LinAlg/Lanczos.h
inst/include/Spectra/LinAlg/UpperHessenbergQR.h
inst/include/Spectra/LinAlg/RitzPairs.h
inst/include/Spectra/LinAlg/Orthogonalization.h
inst/include/Spectra/LinAlg/SearchSpace.h
inst/include/Spectra/LinAlg/TridiagEigen.h
inst/include/Spectra/LinAlg/Arnoldi.h
inst/include/Spectra/LinAlg/UpperHessenbergEigen.h
inst/include/Spectra/contrib/PartialSVDSolver.h
inst/include/Spectra/contrib/LOBPCGSolver.h
inst/include/Spectra/Util/Version.h
inst/include/Spectra/Util/GEigsMode.h
inst/include/Spectra/Util/TypeTraits.h
inst/include/Spectra/Util/SimpleRandom.h
inst/include/Spectra/Util/SelectionRule.h
inst/include/Spectra/Util/CompInfo.h
inst/include/Spectra/MatOp/DenseGenComplexShiftSolve.h
inst/include/Spectra/MatOp/SparseGenComplexShiftSolve.h
inst/include/Spectra/MatOp/DenseSymShiftSolve.h
inst/include/Spectra/MatOp/SymShiftInvert.h
inst/include/Spectra/MatOp/DenseGenRealShiftSolve.h
inst/include/Spectra/MatOp/SparseGenMatProd.h
inst/include/Spectra/MatOp/SparseSymMatProd.h
inst/include/Spectra/MatOp/SparseRegularInverse.h
inst/include/Spectra/MatOp/SparseGenRealShiftSolve.h
inst/include/Spectra/MatOp/DenseSymMatProd.h
inst/include/Spectra/MatOp/DenseCholesky.h
inst/include/Spectra/MatOp/DenseGenMatProd.h
inst/include/Spectra/MatOp/SparseSymShiftSolve.h
inst/include/Spectra/MatOp/SparseCholesky.h
inst/include/Spectra/MatOp/internal/SymGEigsShiftInvertOp.h
inst/include/Spectra/MatOp/internal/SymGEigsBucklingOp.h
inst/include/Spectra/MatOp/internal/SymGEigsCholeskyOp.h
inst/include/Spectra/MatOp/internal/SymGEigsCayleyOp.h
inst/include/Spectra/MatOp/internal/SymGEigsRegInvOp.h
inst/include/Spectra/MatOp/internal/ArnoldiOp.h
inst/include/Utilities/openme-utils.hpp
inst/include/Utilities/Utilities.hpp
inst/include/Utilities/system-utils.hpp
inst/include/Utilities/pkg_omp.h
inst/include/Utilities/SystemInfo.hpp
inst/doc/BigDataStatMeth.html
inst/doc/BigDataStatMeth.Rmd inst/doc/BigDataStatMeth.R
inst/extdata/colesterol.csv
build/vignette.rds
vignettes/references.bib
vignettes/BigDataStatMeth.Rmd
data/cancer.rda
data/colesterol.csv
data/miRNA.rda
man/hdf5_close_file.Rd man/rcpp_hdf5dataset_crossprod.Rd man/bdWrite_hdf5_dimnames.Rd man/rcpp_hdf5dataset_write_all.Rd man/rcpp_hdf5_create_matrix.Rd man/rcpp_hdf5_close_file_handles.Rd man/rcpp_hdf5dataset_is_valid.Rd man/chol.HDF5Matrix.Rd man/filter_low_coverage.Rd man/hdf5_import.Rd man/rcpp_hdf5dataset_rowMins.Rd man/bdgetDatasetsList_hdf5.Rd man/var.HDF5Matrix.Rd man/rcpp_hdf5dataset_open.Rd man/bdblockSum.Rd man/split.HDF5Matrix.Rd man/object_size.Rd man/colVars.Rd man/rcpp_hdf5dataset_rowSums.Rd man/rcpp_hdf5dataset_colSums.Rd man/cbind.HDF5Matrix.Rd man/print.HDF5Matrix.Rd man/is_open.Rd man/reduce.Rd man/hdf5_reduce.Rd man/rcpp_hdf5dataset_info.Rd man/svd.Rd man/bdpseudoinv.Rd man/as.data.frame.HDF5Matrix.Rd man/bdmove_hdf5_dataset.Rd man/rcpp_hdf5_close_all_registry.Rd man/sweep.HDF5Matrix.Rd man/close.HDF5Matrix.Rd man/length.HDF5Matrix.Rd man/rcpp_hdf5dataset_subset.Rd man/rcpp_hdf5dataset_close.Rd man/rcpp_hdf5dataset_read_dimnames.Rd man/tcrossprod.HDF5Matrix.Rd man/rcpp_hdf5dataset_tcrossprod.Rd man/sd.HDF5Matrix.Rd man/as.matrix.HDF5Matrix.Rd man/diag_scale.Rd man/can_allocate.Rd man/solve.HDF5Matrix.Rd man/bdImportTextFile_hdf5.Rd man/hdf5matrix_options.Rd man/rcpp_hdf5dataset_dim.Rd man/rcpp_hdf5dataset_multiply.Rd man/bdblockSubstract.Rd man/str.HDF5Matrix.Rd man/rcpp_hdf5dataset_colMaxs.Rd man/colMeans.Rd man/dot-get_option.Rd man/BigDataStatMeth.Rd man/rcpp_hdf5dataset_add.Rd man/Ops.HDF5Matrix.Rd man/list_datasets.Rd man/rcpp_hdf5_close_at_paths.Rd man/rcpp_hdf5dataset_colVars.Rd man/colesterol.Rd man/rbind.HDF5Matrix.Rd man/diag-replace.Rd man/bdImportData_hdf5.Rd man/rcpp_hdf5dataset_scalar_max.Rd man/get_memory_thresholds.Rd man/rcpp_hdf5dataset_rowVars.Rd man/get_total_ram.Rd man/rcpp_hdf5dataset_scalar_mean.Rd man/prcomp.HDF5Matrix.Rd man/bdScalarwproduct.Rd man/HDF5Matrix-S3.Rd man/rcpp_hdf5dataset_scalar_sd.Rd man/diag_op.Rd man/rcpp_hdf5dataset_rowMaxs.Rd man/rcpp_hdf5_close_file_handles_safe.Rd man/hdf5_apply.Rd man/rcpp_hdf5dataset_subtract.Rd man/hdf5_create_matrix.Rd man/multiply_sparse.HDF5Matrix.Rd man/scale.Rd man/get_available_ram.Rd man/bdCreate_hdf5_matrix.Rd man/rcpp_hdf5dataset_mul_ew.Rd man/rcpp_hdf5dataset_colMeans.Rd man/colSds.Rd man/dim.HDF5Matrix.Rd man/get_recommended_threads.Rd man/apply_function.Rd man/rcpp_hdf5dataset_div_ew.Rd man/svd.HDF5Matrix.Rd man/bdReduce_hdf5_dataset.Rd man/diag.Rd man/colSums.Rd man/dot-hdf5matrix_options.Rd man/print.HDF5PCA.Rd man/rcpp_hdf5dataset_rowSds.Rd man/split_dataset.Rd man/impute_snps.Rd man/hdf5_close_all.Rd man/rcpp_hdf5dataset_scalar_var.Rd man/dimnames-set-.HDF5Matrix.Rd man/hdf5_matrix.Rd man/system_info.Rd man/bd_wproduct.Rd man/memory_info.Rd man/hdf5_import_multiple.Rd man/qr.Rd man/eigen.Rd man/rcpp_hdf5dataset_scalar_min.Rd man/colMaxs.Rd man/subset-.HDF5Matrix.Rd man/bdCrossprod.Rd man/bdCreate_hdf5_group.Rd man/bdCorr_matrix.Rd man/crossprod.HDF5Matrix.Rd man/matmul.Rd man/rcpp_hdf5_close_all_file_handles.Rd man/bdapply_Function_hdf5.Rd man/bdblockMult.Rd man/colMins.Rd man/multiply_sparse.Rd man/cancer.Rd man/sub-.HDF5Matrix.Rd man/show_hdf5matrix_options.Rd man/cor.HDF5Matrix.Rd man/bdtCrossprod.Rd man/dot-onUnload.Rd man/rcpp_hdf5dataset_colSds.Rd man/qr.HDF5Matrix.Rd man/miRNA.Rd man/cor.Rd man/bdpseudoinv_hdf5.Rd man/rcpp_hdf5dataset_write_block.Rd man/rcpp_hdf5dataset_colMins.Rd man/sweep.Rd man/HDF5Matrix-scalar-aggregations.Rd man/filter_maf.Rd man/get_cpu_cores.Rd man/rcpp_hdf5dataset_rowMeans.Rd man/rcpp_hdf5dataset_scalar_sum.Rd man/pseudoinverse.Rd man/rcpp_hdf5dataset_write_dimnames.Rd man/rcpp_hdf5dataset_read_all.Rd man/dimnames.HDF5Matrix.Rd
BigDataStatMeth documentation built on May 15, 2026, 1:07 a.m.