cornerpies: Make pie charts for plotting ranges on corners
In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

Description Usage Arguments Details Value Note Author(s) References See Also Examples

This function makes pie charts for plotting ranges on corners. It makes use of ape:::floating.pie.asp to plot the pie charts on the corners.

1 2	cornerpies(pievals, coords, piecol, adj = c(0.5, 0.5), ...)

`pievals`	The matrix (numnodes x numstates) of probabilities to plot.
`coords`	The coordinates at which to plot the labels.
`piecol`	The color for each possible state.
`adj`	Position adjustment; default `adj=c(0.5,0.5)`
`...`	Additional arguments to standard functions

To get the corner coordinates, use corner_coords. Please note the special input required in that function to get it to access a corner-coordinates function in the extensions data (extdata) directory.

nothing

Go BEARS!

Nicholas J. Matzke matzke@berkeley.edu

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster https://code.google.com/p/lagrange/

Matzke_2012_IBS

ReeSmith2008

cornerlabels, corner_coords, get_lagrange_nodenums, LGpy_splits_fn_to_table, LGcpp_splits_fn_to_table

test=1

Loading required package: rexpokit
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: Rcpp
Loading required package: cladoRcpp
Loading required package: ape
Loading required package: phylobase

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges