extrDrugKR: Calculate the KR (Klekota and Roth) Molecular Fingerprints...

Description Usage Arguments Details Value Author(s) See Also Examples

Description

Calculate the KR (Klekota and Roth) Molecular Fingerprints (in Compact Format)

Usage

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extrDrugKR(molecules, silent = TRUE)

Arguments

molecules

Parsed molucule object.

silent

Logical. Whether the calculating process should be shown or not, default is TRUE.

Details

Calculate the 4860 bit fingerprint defined by Klekota and Roth.

Value

A list, each component represents one of the molecules, each element in the component represents the index of which element in the fingerprint is 1. Each component's name is the length of the fingerprints.

Author(s)

Min-feng Zhu <wind2zhu@163.com>, Nan Xiao <http://r2s.name>

See Also

extrDrugKRComplete

Examples

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smi = system.file('vignettedata/test.smi', package = 'BioMedR')
mol = readMolFromSmi(smi, type = 'mol')
fp  = extrDrugKR(mol)
head(fp)

BioMedR documentation built on July 5, 2019, 9:03 a.m.