smart_plot: smart_plot

In BioVizSeq: Visualizing the Elements Within Bio-Sequences

smart_plot

Description

Visualization of domain in SMART result file

Usage

smart_plot(
  fasta_file,
  the_order = NULL,
  domain_select = NULL,
  shape = "RoundRect",
  r = 0.3,
  legend_size = 15,
  domain_color = NULL
)

Arguments

fasta_file	The path of protein fasta file.
the_order	The path of order file. A List of Gene ID , One ID Per Line.
domain_select	The domain ID which you want to align with.
shape	RoundRect or Rect.
r	The radius of rounded corners.
legend_size	The size of legend.
domain_color	The color set of domain.

Value

p

Author(s)

Shiqi Zhao

BioVizSeq documentation built on Aug. 22, 2025, 9:13 a.m.