“Lasker”calculates the lasker kinship coefficient starting from a surname frequency table.
is a surname frequency table where the N rows correspond to the surnames present in the whole population and the M columns are the subpopulations
The use of “lasker” could be problematic, because different people are likely to arrange isonymy data in different ways on their computers. We decided for a matrix format for the isonymy data; the function would originally accept data in a different format and then convert it internally, but this would be a problem for people with data arranged in a different format. In the end we decided to write a specific function, "sur.freq", to generate surname frequency tables directly from raw marriage data or marriage-like data (the most commonly used sources in bio-demographic studies). For other types of surname data, see the verbose explanation in the info for the dataset "surnames" so it would be clear for the user how “lasker” works.
Returns a square symmetric kinship matrix.
Federico C. F. Calboli and Alessio Boattini [email protected]
Lasker, G.W. 1977. A coefficient of relationship by isonymy: A method for estimating the genetic relationship between populations. Hum. Biol. 49:489-493.
sur.freq to generate the input surname frequency table from marriage data,
surnames for an explanation on how to generate the correct input table from other surname sources,
uri for other types of inter-population kinship matrices
1 2 3 4 5 6 7 8 9 10 11 12 13 14
# starting from a raw marriage records dataset: data(valley) tot <- sur.freq(valley,valley$PAR,valley$SURM,valley$SURF) tot # a frequency table calculated above all the surnames lask.kin <- lasker(tot) lask.kin # a kinship matrix #starting from a generic surname frequency table data(surnames) surnames #a made-up dataset # the surnames are arranged as the _rows_ and the populations are the _columns_ # the use of the function ``Lasker'' just turns this data into a kinship matrix lask.kin <- lasker(surnames) lask.kin
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.