Biograph: Explore Life Histories

Transition rates are computed from transitions and exposures.Useful graphics and life-course indicators are computed. The package structures the data for multistate statistical and demographic modeling of life histories.

AuthorFrans Willekens
Date of publication2016-03-31 17:50:43
MaintainerFrans Willekens <willekens@nidi.nl>
LicenseGPL-2
Version2.0.6

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age_as_Date: Converts a vector of ages to object of class 'Date'.

age_as_year: Converts a vector of ages to decimal year (calendar year and...

AgeTrans: Ages at transition

Biograph.Lexis: Converts Biograph object to Lexis object of class "Lexis"

Biograph.long: Converts Biograph object to long format

Biograph.msm: Biograph to msm format

Biograph.mstate: Converts Biograph object to mstate object of class "msdata"

Biograph.mvna: Converts Biograph object to input data for mvna package

Biograph-package: Explore life histories (biographies, lifepaths)

ChangeObservationWindow.e: Changes observation window to period between two transitions

ChangeObservationWindow.t: Changes observation window to period between two points in...

check.par: Checks major characteristics of Biograph object

cmc_as_age: Converts date in Century Month Code (CMC) to age.

cmc_as_Date: Converts a vector of dates in Century Month Code (CMC) to...

cmc_as_year: Converts date in Century Month Code (CMC) to date in calendar...

Cumrates: Estimates cumulative transition rates

Date_as_age: Converts a vector of dates (class 'Date') to ages.

Date_as_cmc: Converts a vector of dates (class 'Date') to Century Month...

Date_as_year: Converts a vector of dates (class 'Date') to decimal year...

date_b: Converts dates in a Biograph object to dates in another...

date_convert: Converts vector of dates from one format to another

GLHS: GLHS data

GLHS.IllnessDeath: Illness-death model for job transitions

GLHS.trans: Transition matrix of illness-death model (tmat)

Lexis.lines: Draws Lexis diagram with lifelines for selected subjects

Lexislines.episodes: Draws Lexis diagram with lifelines for selected subjects

LexisOccExp: Displays occurrences, exposures and transition rates in a...

Lexispoints: Plot event dates and ages in Lexis diagram

Lexis.points: Plots ages and calendar years at transitions in Lexis diagram

locpath: Determines location of state sequence in Biograph object

MSLT: Multistate life table: survival function and exposure...

NLOG98: NLOG98 Netherlands Family and Fertility Survey 1998

Occup: State occupancies and sojourn times

OverviewEpisodes: Overview of episodes

OverviewTransitions: Overview of transitions

Parameters: Life history parameters from data

plot.cumrates: Plots cumulative transition rates

plot.MSLT.S: Plots survival function.

plot.occup.S: Plots state occupancies

pos.char: Position of a given character in a string variable (first...

pos.charstr: Position of a character string in a string variable

Rates.ac: Estimates occurrence-exposure rates

RateTable: Table for rate calculation

Remove.intrastate: Removes intrastate transitions from Biograph object

rrdat: The Blossfeld-Rohwer subsample of the German Life History...

SamplePath: Obtains samplepath for selected subjects

Sequences: Lists state sequences in the data

Sequences.ind: Individual state trajectories

Sequences.ind.0: Sorts dates in ascending order and generates state sequence...

state_age: Determines for given individuals state occupied at given ages

StateSpace: Get state space

state_time: Determines individual state occupation times

string.blank.omit: Removes blanks in character string, including the leading and...

stringf: Converts character string to vector

Trans: Transitions by age

TransitionAB: Occurrences of selected transition by age

transitions: Generate flow table

year_as_age: Converts decinal years to age.

year_as_cmc: Converts decinal years to cmc.

year_as_Date: Converts a vector of dates in decimal years (calendar years...

YearTrans: Converts dates at transition to years at transition

Files in this package

Biograph
Biograph/inst
Biograph/inst/NEWS.Rd
Biograph/inst/Doc
Biograph/inst/Doc/Biograph_Documentation.doc
Biograph/inst/Doc/create_NFHS.R
Biograph/inst/Doc/CreateBiographobjectM_Table12.pdf
Biograph/inst/Doc/create_simul.R
Biograph/inst/Doc/demos_GLHS.R
Biograph/inst/Doc/rrdat.txt
Biograph/inst/Doc/create_GLHS.R
Biograph/inst/Doc/demos_dates.R
Biograph/inst/Doc/Biograph_Documentation.pdf
Biograph/inst/Doc/create_SHARElife.R
Biograph/inst/Doc/create_ebmt.R
Biograph/inst/Doc/CreateBiographobjectM.doc
Biograph/inst/Doc/demos_NLOG98.R
Biograph/inst/Doc/create_Simple1a.R
Biograph/inst/Doc/CreateBiographobjectM.pdf
Biograph/inst/Doc/create_NLOG98.R
Biograph/inst/Doc/create_Simple1b.R
Biograph/inst/Doc/Biograph.pdf
Biograph/inst/Doc/create_Simple2.R
Biograph/NAMESPACE
Biograph/data
Biograph/data/GLHS.rda
Biograph/data/NLOG98.rda
Biograph/data/rrdat.rda
Biograph/R
Biograph/R/LexisOccExp.R Biograph/R/cmc_as_year.R Biograph/R/Sequences.ind.R Biograph/R/ChangeObservationWindow.e.R Biograph/R/Biograph.mvna.R Biograph/R/OverviewEpisodes.R Biograph/R/GLHS.IllnessDeath.R Biograph/R/MSLT.e.R Biograph/R/year_as_age.R Biograph/R/Remove.intrastate.R Biograph/R/OverviewTransitions.R Biograph/R/Parameters.R Biograph/R/Lexispoints.R Biograph/R/date_b.R Biograph/R/Date_as_year.R Biograph/R/year_as_Date.R Biograph/R/locpath.R Biograph/R/state_age.R Biograph/R/Cumrates.R Biograph/R/check.par.R Biograph/R/age_as_Date.R Biograph/R/pos.char.R Biograph/R/plot.cumrates.R Biograph/R/Biograph.Lexis.R Biograph/R/string.blank.omit.R Biograph/R/Rates.ac.R Biograph/R/Occup.R Biograph/R/age_as_year.R Biograph/R/Lexis.lines.R Biograph/R/YearTrans.R Biograph/R/Biograph.mstate.R Biograph/R/date_convert.R Biograph/R/cmc_as_Date.R Biograph/R/MSLT.S.R Biograph/R/transitions.R Biograph/R/TransitionAB.R Biograph/R/Date_as_cmc.R Biograph/R/Biograph.long.R Biograph/R/StateSpace.R Biograph/R/Date_as_age.R Biograph/R/GLHS.trans.R Biograph/R/state_time.R Biograph/R/stringf.R Biograph/R/Lexislines.episodes.R Biograph/R/Sequences.R Biograph/R/plot.MSLT.S.R Biograph/R/Trans.R Biograph/R/ChangeObservationWindow.t.R Biograph/R/cmc_as_age.R Biograph/R/Lexis.points.R Biograph/R/RateTable.R Biograph/R/Biograph.msm.R Biograph/R/Sequences.ind.0.R Biograph/R/year_as_cmc.R Biograph/R/pos.charstr.R Biograph/R/plot.occup.S.R Biograph/R/AgeTrans.R Biograph/R/SamplePath.R
Biograph/MD5
Biograph/DESCRIPTION
Biograph/man
Biograph/man/Lexis.lines.Rd Biograph/man/Sequences.ind.Rd Biograph/man/RateTable.Rd Biograph/man/TransitionAB.Rd Biograph/man/Sequences.ind.0.Rd Biograph/man/Lexis.points.Rd Biograph/man/SamplePath.Rd Biograph/man/transitions.Rd Biograph/man/check.par.Rd Biograph/man/Cumrates.Rd Biograph/man/Biograph.Lexis.Rd Biograph/man/date_convert.Rd Biograph/man/MSLT.Rd Biograph/man/OverviewEpisodes.Rd Biograph/man/GLHS.trans.Rd Biograph/man/Biograph.msm.Rd Biograph/man/Biograph-package.Rd Biograph/man/pos.charstr.Rd Biograph/man/YearTrans.Rd Biograph/man/cmc_as_year.Rd Biograph/man/Biograph.long.Rd Biograph/man/Date_as_age.Rd Biograph/man/age_as_year.Rd Biograph/man/date_b.Rd Biograph/man/pos.char.Rd Biograph/man/Rates.ac.Rd Biograph/man/year_as_age.Rd Biograph/man/Occup.Rd Biograph/man/cmc_as_age.Rd Biograph/man/Biograph.mstate.Rd Biograph/man/plot.occup.S.Rd Biograph/man/Date_as_year.Rd Biograph/man/Parameters.Rd Biograph/man/Date_as_cmc.Rd Biograph/man/stringf.Rd Biograph/man/Lexispoints.Rd Biograph/man/GLHS.Rd Biograph/man/Remove.intrastate.Rd Biograph/man/Biograph.mvna.Rd Biograph/man/ChangeObservationWindow.e.Rd Biograph/man/GLHS.IllnessDeath.Rd Biograph/man/NLOG98.Rd Biograph/man/AgeTrans.Rd Biograph/man/Lexislines.episodes.Rd Biograph/man/age_as_Date.Rd Biograph/man/cmc_as_Date.Rd Biograph/man/year_as_Date.Rd Biograph/man/plot.MSLT.S.Rd Biograph/man/state_age.Rd Biograph/man/year_as_cmc.Rd Biograph/man/StateSpace.Rd Biograph/man/state_time.Rd Biograph/man/plot.cumrates.Rd Biograph/man/Sequences.Rd Biograph/man/string.blank.omit.Rd Biograph/man/ChangeObservationWindow.t.Rd Biograph/man/OverviewTransitions.Rd Biograph/man/rrdat.Rd Biograph/man/LexisOccExp.Rd Biograph/man/locpath.Rd Biograph/man/Trans.Rd
Biograph/INDEX

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