BoomSpikeSlab: MCMC for Spike and Slab Regression

Spike and slab regression a la McCulloch and George (1997).

AuthorSteven L. Scott <stevescott@google.com>
Date of publication2016-08-18 09:48:07
MaintainerSteven L. Scott <stevescott@google.com>
LicenseLGPL-2.1 | file LICENSE
Version0.7.0

View on CRAN

Man pages

independent.spike.slab.prior: A spike and slab prior assuming a priori independence.

independent.student.spike.slab.prior: Spike and Slab Prior for Regressions with Student T Errors

lm.spike: Spike and slab regression

logit.spike: Spike and slab logistic regression

logit.zellner.prior: Zellner Prior for Logistic Regression

make.spike.slab.prior: Create a spike and slab prior for use with lm.spike.

mlm.spike: Spike and slab multinomial logistic regression

mlm.spike.slab.prior: Create a spike and slab prior for use with mlm.spike.

model.matrix: GetPredictorMatrix

model.matrix.glm.spike: Construct Design Matrices

plot.coefficients: Plot Coefficients.

plot.lm.spike: Plot the results of a spike and slab regression.

plot.lm.spike.residuals: Residual plot for lm.spike

plot.logit.spike: Plot a 'logit.spike' object

plot.logit.spike.fit.summary: Plot Logit or Probit Fit Summary

plot.logit.spike.residuals: Residual plot for 'logit.spike' objects.

plot.marginal.inclusion.probabilities: Plot marginal inclusion probabilities.

plot.model.size: Plot a distribution of model size

plot.poisson.spike: Plot a 'poisson.spike' object

poisson.spike: Spike and slab Poisson regression

poisson.zellner.prior: Zellner Prior for Poisson Regression

predict.lm.spike: Predictions using spike-and-slab regression.

print.summary.lm.spike: Print method for spikeslab objects.

probit.spike: Spike and slab probit regression

residuals.lm.spike: Extract lm.spike Residuals

spike.slab.glm.prior: Zellner Prior for Glm's

spike.slab.prior.base: Base class for spike and slab priors

student.spike.slab.prior: Spike and Slab Prior for Student-T Regression

summarize_spike_slab_coefficients: Numerical summaries of coefficients from a spike and slab...

summary.lm.spike: Numerical summaries of the results from a spike and slab...

summary.logit.spike: Numerical summaries of the results from a spike and slab...

Functions

GetPredictorMatrix Man page
IndependentSpikeSlabPrior Man page
lm.spike Man page
LogitPrior Man page
logit.spike Man page
LogitZellnerPrior Man page
mlm.spike Man page
model.matrix.glm.spike Man page
MultinomialLogitSpikeSlabPrior Man page
plot.lm.spike Man page
PlotLmSpikeCoefficients Man page
PlotLmSpikeResiduals Man page
plot.logit.spike Man page
PlotLogitSpikeFitSummary Man page
PlotLogitSpikeResiduals Man page
PlotMarginalInclusionProbabilities Man page
PlotModelSize Man page
plot.poisson.spike Man page
plot.probit.spike Man page
PlotProbitSpikeFitSummary Man page
PlotProbitSpikeResiduals Man page
poisson.spike Man page
PoissonZellnerPrior Man page
predict.lm.spike Man page
predict.logit.spike Man page
predict.poisson.spike Man page
predict.probit.spike Man page
print.summary.lm.spike Man page
print.summary.logit.spike Man page
probit.spike Man page
residuals.lm.spike Man page
spikeslab Man page
SpikeSlabGlmPrior Man page
SpikeSlabPrior Man page
SpikeSlabPriorBase Man page
StudentIndependentSpikeSlabPrior Man page
StudentSpikeSlabPrior Man page
SummarizeSpikeSlabCoefficients Man page
summary.lm.spike Man page
summary.logit.spike Man page
summary.probit.spike Man page

Files

BoomSpikeSlab
BoomSpikeSlab/src
BoomSpikeSlab/src/Makevars
BoomSpikeSlab/src/mlm_spike_slab_wrapper.cc
BoomSpikeSlab/src/logit_spike_slab_wrapper.cc
BoomSpikeSlab/src/spike_slab_wrapper.cc
BoomSpikeSlab/src/probit_spike_slab_wrapper.cc
BoomSpikeSlab/src/poisson_spike_slab_wrapper.cc
BoomSpikeSlab/src/utils.h
BoomSpikeSlab/NAMESPACE
BoomSpikeSlab/R
BoomSpikeSlab/R/probit.spike.R BoomSpikeSlab/R/model.matrix.R BoomSpikeSlab/R/logit.spike.R BoomSpikeSlab/R/spike.slab.prior.R BoomSpikeSlab/R/mlm.spike.R BoomSpikeSlab/R/poisson.spike.R BoomSpikeSlab/R/lm.spike.R
BoomSpikeSlab/MD5
BoomSpikeSlab/DESCRIPTION
BoomSpikeSlab/man
BoomSpikeSlab/man/plot.logit.spike.residuals.Rd BoomSpikeSlab/man/model.matrix.Rd BoomSpikeSlab/man/summarize_spike_slab_coefficients.Rd BoomSpikeSlab/man/plot.lm.spike.Rd BoomSpikeSlab/man/plot.lm.spike.residuals.Rd BoomSpikeSlab/man/spike.slab.glm.prior.Rd BoomSpikeSlab/man/plot.logit.spike.fit.summary.Rd BoomSpikeSlab/man/lm.spike.Rd BoomSpikeSlab/man/plot.coefficients.Rd BoomSpikeSlab/man/model.matrix.glm.spike.Rd BoomSpikeSlab/man/mlm.spike.Rd BoomSpikeSlab/man/plot.logit.spike.Rd BoomSpikeSlab/man/logit.spike.Rd BoomSpikeSlab/man/poisson.zellner.prior.Rd BoomSpikeSlab/man/independent.student.spike.slab.prior.Rd BoomSpikeSlab/man/plot.marginal.inclusion.probabilities.Rd BoomSpikeSlab/man/residuals.lm.spike.Rd BoomSpikeSlab/man/plot.poisson.spike.Rd BoomSpikeSlab/man/print.summary.lm.spike.Rd BoomSpikeSlab/man/summary.logit.spike.Rd BoomSpikeSlab/man/make.spike.slab.prior.Rd BoomSpikeSlab/man/poisson.spike.Rd BoomSpikeSlab/man/predict.lm.spike.Rd BoomSpikeSlab/man/probit.spike.Rd BoomSpikeSlab/man/summary.lm.spike.Rd BoomSpikeSlab/man/plot.model.size.Rd BoomSpikeSlab/man/spike.slab.prior.base.Rd BoomSpikeSlab/man/student.spike.slab.prior.Rd BoomSpikeSlab/man/independent.spike.slab.prior.Rd BoomSpikeSlab/man/mlm.spike.slab.prior.Rd BoomSpikeSlab/man/logit.zellner.prior.Rd
BoomSpikeSlab/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.