BoomSpikeSlab: MCMC for Spike and Slab Regression
Version 0.8.0

Spike and slab regression a la McCulloch and George (1997).

Browse man pages Browse package API and functions Browse package files

AuthorSteven L. Scott <stevescott@google.com>
Date of publication2017-04-08 20:31:33 UTC
MaintainerSteven L. Scott <stevescott@google.com>
LicenseLGPL-2.1 | file LICENSE
Version0.8.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BoomSpikeSlab")

Man pages

independent.spike.slab.prior: A spike and slab prior assuming a priori independence.
independent.student.spike.slab.prior: Spike and Slab Prior for Regressions with Student T Errors
lm.spike: Spike and slab regression
logit.spike: Spike and slab logistic regression
logit.zellner.prior: Zellner Prior for Logistic Regression
make.spike.slab.prior: Create a spike and slab prior for use with lm.spike.
mlm.spike: Spike and slab multinomial logistic regression
mlm.spike.slab.prior: Create a spike and slab prior for use with mlm.spike.
model.matrix: GetPredictorMatrix
model.matrix.glm.spike: Construct Design Matrices
plot.coefficients: Plot Coefficients.
plot.lm.spike: Plot the results of a spike and slab regression.
plot.lm.spike.residuals: Residual plot for lm.spike
plot.logit.spike: Plot a 'logit.spike' object
plot.logit.spike.fit.summary: Plot Logit or Probit Fit Summary
plot.logit.spike.residuals: Residual plot for 'logit.spike' objects.
plot.marginal.inclusion.probabilities: Plot marginal inclusion probabilities.
plot.model.size: Plot a distribution of model size
plot.poisson.spike: Plot a 'poisson.spike' object
plot.qreg.spike: Plot the results of a spike and slab regression.
poisson.spike: Spike and slab Poisson regression
poisson.zellner.prior: Zellner Prior for Poisson Regression
predict.lm.spike: Predictions using spike-and-slab regression.
print.summary.lm.spike: Print method for spikeslab objects.
probit.spike: Spike and slab probit regression
qreg.spike: Quantile Regression
residuals.lm.spike: Extract lm.spike Residuals
spike.slab.glm.prior: Zellner Prior for Glm's
spike.slab.prior.base: Base class for spike and slab priors
student.spike.slab.prior: Spike and Slab Prior for Student-T Regression
summarize_spike_slab_coefficients: Numerical summaries of coefficients from a spike and slab...
summary.lm.spike: Numerical summaries of the results from a spike and slab...
summary.logit.spike: Numerical summaries of the results from a spike and slab...

Functions

CheckFunction Source code
GetPredictorMatrix Man page Source code
IndependentSpikeSlabPrior Man page Source code
LogitPrior Man page
LogitZellnerPrior Man page Source code
MultinomialLogitSpikeSlabPrior Man page Source code
PlotLmSpikeCoefficients Man page Source code
PlotLmSpikeResiduals Man page Source code
PlotLogitSpikeFitSummary Man page Source code
PlotLogitSpikeResiduals Man page Source code
PlotMarginalInclusionProbabilities Man page Source code
PlotModelSize Man page Source code
PlotProbitSpikeFitSummary Man page Source code
PlotProbitSpikeResiduals Man page Source code
PoissonZellnerPrior Man page Source code
SpikeSlabGlmPrior Man page Source code
SpikeSlabPrior Man page Source code
SpikeSlabPriorBase Man page Source code
StudentIndependentSpikeSlabPrior Man page Source code
StudentSpikeSlabPrior Man page Source code
SummarizeSpikeSlabCoefficients Man page Source code
lm.spike Man page Source code
logit.spike Man page Source code
mlm.spike Man page Source code
model.matrix.glm.spike Man page Source code
plot.lm.spike Man page Source code
plot.logit.spike Man page Source code
plot.poisson.spike Man page Source code
plot.probit.spike Man page Source code
plot.qreg.spike Man page Source code
poisson.spike Man page Source code
poisson.spike.fit Source code
predict.lm.spike Man page Source code
predict.logit.spike Man page Source code
predict.poisson.spike Man page Source code
predict.probit.spike Man page Source code
predict.qreg.spike Man page Source code
print.summary.lm.spike Man page Source code
print.summary.logit.spike Man page Source code
print.summary.probit.spike Source code
probit.spike Man page Source code
qreg.spike Man page Source code
residuals.lm.spike Man page Source code
spikeslab Man page
summary.lm.spike Man page Source code
summary.logit.spike Man page Source code
summary.probit.spike Man page Source code

Files

src
src/Makevars
src/mlm_spike_slab_wrapper.cc
src/logit_spike_slab_wrapper.cc
src/spike_slab_wrapper.cc
src/probit_spike_slab_wrapper.cc
src/poisson_spike_slab_wrapper.cc
src/utils.h
src/quantile_spike_wrapper.cc
src/boom_spike_slab_init.cc
NAMESPACE
R
R/probit.spike.R
R/model.matrix.R
R/qreg.spike.R
R/logit.spike.R
R/spike.slab.prior.R
R/mlm.spike.R
R/poisson.spike.R
R/lm.spike.R
MD5
DESCRIPTION
man
man/plot.logit.spike.residuals.Rd
man/model.matrix.Rd
man/summarize_spike_slab_coefficients.Rd
man/plot.lm.spike.Rd
man/plot.lm.spike.residuals.Rd
man/spike.slab.glm.prior.Rd
man/qreg.spike.Rd
man/plot.logit.spike.fit.summary.Rd
man/lm.spike.Rd
man/plot.coefficients.Rd
man/model.matrix.glm.spike.Rd
man/mlm.spike.Rd
man/plot.logit.spike.Rd
man/logit.spike.Rd
man/poisson.zellner.prior.Rd
man/independent.student.spike.slab.prior.Rd
man/plot.marginal.inclusion.probabilities.Rd
man/residuals.lm.spike.Rd
man/plot.poisson.spike.Rd
man/print.summary.lm.spike.Rd
man/summary.logit.spike.Rd
man/make.spike.slab.prior.Rd
man/poisson.spike.Rd
man/predict.lm.spike.Rd
man/probit.spike.Rd
man/summary.lm.spike.Rd
man/plot.model.size.Rd
man/plot.qreg.spike.Rd
man/spike.slab.prior.base.Rd
man/student.spike.slab.prior.Rd
man/independent.spike.slab.prior.Rd
man/mlm.spike.slab.prior.Rd
man/logit.zellner.prior.Rd
LICENSE
BoomSpikeSlab documentation built on May 20, 2017, 5:44 a.m.