CEGO: Combinatorial Efficient Global Optimization

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Model building, surrogate model based optimization and Efficient Global Optimization in combinatorial or mixed search spaces.

Author
Martin Zaefferer <mzaefferer@gmail.com>
Date of publication
2016-08-17 21:44:34
Maintainer
Martin Zaefferer <mzaefferer@gmail.com>
License
GPL (>= 3)
Version
2.1.0

View on CRAN

Man pages

benchmarkGeneratorFSP
Create Flow shop Scheduling Problem (FSP) Benchmark
benchmarkGeneratorNKL
NK-Landscape Benchmark Creation
benchmarkGeneratorQAP
Create Quadratic Assignment Problem (QAP) Benchmark
benchmarkGeneratorTSP
Create (Asymmetric) Travelling Salesperson Problem (TSP)...
benchmarkGeneratorWT
Create single-machine total Weighted Tardiness (WT) Problem...
buildModel
Model building
CEGO-package
Combinatorial Efficient Global Optimization in R
combinatorialKriging
Kriging Model
combinatorialLM
Linear Distance-Based Model
combinatorialRBFN
Radial Basis Function Network
correctionAugmentedDistanceVector
Augmented Distance Correction
correctionAugmentedKernelVector
Augmented Kernel Correction
correctionCNSD
Correcting Conditional Negative Semi-Definiteness
correctionDefinite
Correcting Definiteness of a Matrix
correctionDistanceMatrix
Correction of a Distance Matrix
correctionKernelMatrix
Correction of a Kernel (Correlation) Matrix
designMaxMinDist
Max-Min-Distance Design
designRandom
Random Design
distanceMatrix
Calculate Distance Matrix
distanceMatrixUpdate
Update distance matrix
distanceMatrixWrapper
Distance Matrix Wrapper
distancePermutationAdjacency
Adjacency Distance for Permutations
distancePermutationChebyshev
Chebyshev Distance for Permutations
distancePermutationCos
Cosine Distance for Permutations
distancePermutationEuclidean
Euclidean Distance for Permutations
distancePermutationHamming
Hamming Distance for Permutations
distancePermutationInsert
Insert Distance for Permutations
distancePermutationInterchange
Interchange Distance for Permutations
distancePermutationLCStr
Longest Common Substring Distance for Permutations
distancePermutationLee
Lee Distance for Permutations
distancePermutationLevenshtein
Levenshtein Distance for Permutations
distancePermutationLex
Lexicographic permutation distance
distancePermutationManhattan
Manhattan Distance for Permutations
distancePermutationPosition
Position Distance for Permutations
distancePermutationPosition2
Squared Position Distance for Permutations
distancePermutationR
R-Distance for Permutations
distancePermutationSwap
Swap-Distance for Permutations
distanceVector
Calculate Distance Vector
fcorrCubic
Cubic Kernel for Kriging
fcorrGauss
Gaussian Kernel for Kriging
fcorrLinear
Linear Kernel for Kriging
fcorrSphere
Spherical Kernel for Kriging
infillExpectedImprovement
Negative Logarithm of Expected Improvement
is.CNSD
Check for Conditional Negative Semi-Definiteness
is.NSD
Check for Negative Semi-Definiteness
is.PSD
Check for Positive Semi-Definiteness
landscapeGeneratorGaussian
Create Gaussian Landscape
landscapeGeneratorGaussianBuild
Gaussian Landscape Core function
landscapeGeneratorGaussianEval
Gaussian Landscape Evaluation
landscapeGeneratorMUL
Multimodal Fitness Landscape
landscapeGeneratorUNI
Unimodal Fitness Landscape
lexicographicPermutationOrderNumber
Lexicographic order number
modelKriging
Kriging Model
modelKrigingInit
Kriging: Initial guess and bounds
modelKrigingLikelihood
Calculate negative log-likelihood
modelLinear
Distance based Linear Model
modelRBFN
RBFN Model
mutationBinary
Bit-flip Mutation for Bit-strings
mutationBinaryFast
Bit-flip Mutation for Bit-strings (Fast)
mutationPermutationInterchange
Interchange Mutation for Permutations
mutationPermutationInterchangeCore
Interchange of permutation elements
mutationPermutationReversal
Reversal Mutation for Permutations
mutationPermutationSwap
Swap Mutation for Permutations
nearCNSD
Nearest CNSD matrix
optim2Opt
Two-Opt
optimCEGO
Combinatorial Efficient Global Optimization
optimEA
Evolutionary Algorithm for Combinatorial Optimization
optimInterface
Optimization Interface (continuous, bounded)
optimizeModel
Optimize Surrogate Model
optimMaxMinDist
Max-Min-Distance Optimizer
optimRS
Combinatorial Random Search
predict.modelKriging
Kriging Prediction
predict.modelLinear
Predict: Combinatorial Kriging
predict.modelRBFN
Predict: Combinatorial RBFN
recombinationBinaryUniformCrossoverFast
Uniform Crossover for Bit Strings
recombinationPermutationCycleCrossover
Cycle Crossover (CX) for Permutations
removeDuplicates
Remove Duplicates
removeDuplicatesOffspring
Remove Duplicates from Offsprings
repairConditionsCorrelationMatrix
Repair Conditions of a Correlation Matrix
repairConditionsDistanceMatrix
Repair Conditions of a Distance Matrix
solutionFunctionGeneratorBinary
Binary String Generator Function
solutionFunctionGeneratorPermutation
Permutation Generator Function
step2Opt
2-Opt Step
tournamentSelection
Tournament Selection

Files in this package

CEGO
CEGO/inst
CEGO/inst/CITATION
CEGO/src
CEGO/src/permutationDistance.c
CEGO/NAMESPACE
CEGO/NEWS
CEGO/R
CEGO/R/modelLm.R
CEGO/R/isDefinite.R
CEGO/R/optimInterface.R
CEGO/R/modelRBFN.R
CEGO/R/optimCEGO.R
CEGO/R/optimEA.R
CEGO/R/permutationBenchmarkFunctions.R
CEGO/R/permutationOperators.R
CEGO/R/indefiniteLearning.R
CEGO/R/optim2opt.R
CEGO/R/cegoPackage.R
CEGO/R/modelKriging.R
CEGO/R/optimMaxMinDist.R
CEGO/R/nearCNSD.R
CEGO/R/modelKrigingLikelihood.R
CEGO/R/binaryOperators.R
CEGO/R/permutationDistances.r
CEGO/R/binaryBenchmarkFunctions.R
CEGO/R/optimRS.R
CEGO/R/misc.R
CEGO/R/distanceCalculation.R
CEGO/R/distanceBasedLandscapeGenerators.R
CEGO/R/DoE.R
CEGO/R/modelKrigingPredict.R
CEGO/MD5
CEGO/DESCRIPTION
CEGO/man
CEGO/man/step2Opt.Rd
CEGO/man/optimMaxMinDist.Rd
CEGO/man/infillExpectedImprovement.Rd
CEGO/man/combinatorialRBFN.Rd
CEGO/man/optimInterface.Rd
CEGO/man/mutationBinaryFast.Rd
CEGO/man/modelRBFN.Rd
CEGO/man/benchmarkGeneratorTSP.Rd
CEGO/man/distancePermutationLex.Rd
CEGO/man/distancePermutationInsert.Rd
CEGO/man/predict.modelLinear.Rd
CEGO/man/tournamentSelection.Rd
CEGO/man/distanceMatrix.Rd
CEGO/man/distancePermutationEuclidean.Rd
CEGO/man/repairConditionsDistanceMatrix.Rd
CEGO/man/mutationPermutationInterchangeCore.Rd
CEGO/man/distancePermutationCos.Rd
CEGO/man/mutationPermutationReversal.Rd
CEGO/man/landscapeGeneratorGaussian.Rd
CEGO/man/correctionAugmentedKernelVector.Rd
CEGO/man/distancePermutationR.Rd
CEGO/man/fcorrLinear.Rd
CEGO/man/fcorrSphere.Rd
CEGO/man/distancePermutationInterchange.Rd
CEGO/man/is.PSD.Rd
CEGO/man/landscapeGeneratorUNI.Rd
CEGO/man/predict.modelRBFN.Rd
CEGO/man/combinatorialLM.Rd
CEGO/man/correctionAugmentedDistanceVector.Rd
CEGO/man/designRandom.Rd
CEGO/man/distancePermutationLee.Rd
CEGO/man/landscapeGeneratorGaussianBuild.Rd
CEGO/man/distanceMatrixUpdate.Rd
CEGO/man/optimCEGO.Rd
CEGO/man/recombinationPermutationCycleCrossover.Rd
CEGO/man/distanceMatrixWrapper.Rd
CEGO/man/removeDuplicatesOffspring.Rd
CEGO/man/fcorrGauss.Rd
CEGO/man/is.CNSD.Rd
CEGO/man/distancePermutationSwap.Rd
CEGO/man/distancePermutationAdjacency.Rd
CEGO/man/solutionFunctionGeneratorPermutation.Rd
CEGO/man/optimizeModel.Rd
CEGO/man/mutationPermutationInterchange.Rd
CEGO/man/optimEA.Rd
CEGO/man/modelKrigingLikelihood.Rd
CEGO/man/distancePermutationLevenshtein.Rd
CEGO/man/removeDuplicates.Rd
CEGO/man/solutionFunctionGeneratorBinary.Rd
CEGO/man/distancePermutationLCStr.Rd
CEGO/man/CEGO-package.Rd
CEGO/man/correctionDistanceMatrix.Rd
CEGO/man/correctionCNSD.Rd
CEGO/man/fcorrCubic.Rd
CEGO/man/correctionDefinite.Rd
CEGO/man/distancePermutationManhattan.Rd
CEGO/man/distancePermutationChebyshev.Rd
CEGO/man/mutationPermutationSwap.Rd
CEGO/man/distancePermutationPosition2.Rd
CEGO/man/landscapeGeneratorGaussianEval.Rd
CEGO/man/modelLinear.Rd
CEGO/man/modelKriging.Rd
CEGO/man/modelKrigingInit.Rd
CEGO/man/lexicographicPermutationOrderNumber.Rd
CEGO/man/distanceVector.Rd
CEGO/man/benchmarkGeneratorQAP.Rd
CEGO/man/distancePermutationHamming.Rd
CEGO/man/predict.modelKriging.Rd
CEGO/man/is.NSD.Rd
CEGO/man/benchmarkGeneratorFSP.Rd
CEGO/man/buildModel.Rd
CEGO/man/distancePermutationPosition.Rd
CEGO/man/nearCNSD.Rd
CEGO/man/benchmarkGeneratorNKL.Rd
CEGO/man/correctionKernelMatrix.Rd
CEGO/man/optimRS.Rd
CEGO/man/landscapeGeneratorMUL.Rd
CEGO/man/benchmarkGeneratorWT.Rd
CEGO/man/combinatorialKriging.Rd
CEGO/man/mutationBinary.Rd
CEGO/man/designMaxMinDist.Rd
CEGO/man/optim2Opt.Rd
CEGO/man/repairConditionsCorrelationMatrix.Rd
CEGO/man/recombinationBinaryUniformCrossoverFast.Rd